Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00046 ATGCCTTCTGCTGAATCATCGTCACCTTCCTCCGAAACCATTTGCGTCACCGGCGCTGGTGGCTTCATCGCTTCTTGGATGGTCAAACTTCTCTTGGAGAAAGGCTACAGTGTGAGAGGAACCCTCAGAAACCCAGATGATCCCAAAAACGGACACTTGAAAGAGTTTGAAGGAGCCTCCGAAAGACTAACTCTGCATAAGGTTGACCTCCTTGACCTTCACTCCGTCAGATCAGTCATTCACGGCTGTGATGGCGTCTTTCACACGGCTTCTCCCGTCACCGACAATCCCGAAGAAATGGTGGAGCCAGCGGTGAATGGAGCGAAGAATGTGATCATAGCAGCAGCAGAGGCTAAAGTGCGACGTGTGGTGTTCACCTCATCAATTGGTGCCGTCTATATGGACCCCAAAAGAAGCATCGATTTGGTTGTTGACGAGTCTTGTTGGAGTGATTTAGAATATTGCAAGAACACCAAGAATTGGTATTGCTATGGGAAGGCCGTGGCTGAACAAGCAGCATGGGACACGGCAAAAGAGCAGGGGGTGGACTTGGTTGTAGTGAATCCAGTATTGGTTCTTGGACCATTACTGCAACCAACCATCAATGCTAGCACAATTCACATCCTCAAGTACCTCACTGGCTCTGCTAAGACCTATGCAAATGCCACCCAGGCTTATGTGCATGTGAGGGATGTGGCATTGGCCCATATACTTGTTTACGAGAAGCCTTCTGCTTCTGGTCGATATTTATGTGCTGAAAGCTCCCTGCACCGTGGAGAACTAGTTGAAATTCTGGCCAAGTATTTCCCCGAGTACCCAGTTCCCACCAAGTGTTCTGATGAAAAGAATCCCAGAGCAAAACCCTACACCTTTTCGAATCAGAAGCTGAAAGATTTGGGATTGGAATTTACTCCAGTTAGTCAGTGTCTATATGAAACGGTTAAGAGCCTGCAGGAGAAAGGCCACCTTCCTGTTCCTGCAAAGCAGGAAGATTCAACTACAGTGAAATCCTAA 1014 0.4793 MPSAESSSPSSETICVTGAGGFIASWMVKLLLEKGYSVRGTLRNPDDPKNGHLKEFEGASERLTLHKVDLLDLHSVRSVIHGCDGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPKRSIDLVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKEQGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPVPTKCSDEKNPRAKPYTFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPAKQEDSTTVKS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00046 337 CDD FR_SDR_e 15 301 - -
Spst5g00046 337 FunFam Cinnamoyl-CoA reductase 1 5 336 - -
Spst5g00046 337 Gene3D - 3 337 - -
Spst5g00046 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 318 IPR036291 -
Spst5g00046 337 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 - -
Spst5g00046 337 Pfam NAD dependent epimerase/dehydratase family 14 245 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00046 Spst-Chr5 592175 595424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00046 14 277 Monolignol Biosynthesis Gene Families AT1G80820 75.379 1.13e-144 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00046 K09753 - gmx:100789070 629.017