LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g00044	ATGGATCCCGGATCCAATGGCACGGCCACGGGTAGCAGCAGGAACATCCTGTTCAACAAGTACGAGATAGGGAAGATTCTGGGACAGGGGAACTTCGCTAAAGTTTACCACGGGAGAAACCTCAGCACAAACGACAGCGTGGCCATCAAGGTCATAAAAAAGGAGAGGCTCCAGAAGGAGAAGCTGGTCAAACAGATAAAACGCGAGGTTTCCGTCATGCGCTTGGTGCGTCACCCCCACATCGTGGAGCTCAAGGAGGTGATGGCAAACAAAGCCAAAATTTTCATGGTCGTCGAATACGTCAAGGGAGGGGAACTCTTCGCCAAGGTGGCCAAGGGAAAGATGAAGGAAGACGTTGCCCGAAAGTATTTTCAACAGCTCATCAGCGCCGTCGACTTCTGCCACAGCCGCGGCGTCACTCACCGTGATCTGAAGCCGGAGAATCTGCTCCTCGACGAGAACGAAGACCTTAAAGTCACCGACTTCGGCTTGTCGGCGCTGCCGGACCAGCGTAGATCCGACGGGATGCTCGTGACGCCGTGCGGCACGCCGGCCTACGTGGCGCCGGAGGTTCTGAAAAAGAAGGGCTACGATGGGTCGAAGGCTGATATTTGGTCGTGTGGGGTGATTCTCTTCGCTCTTCTTTCTGGGTATTTACCCTTTCAGGGTGAGAATGTTATGAGGATTTACAGCAAGTCTTTCAAAGCTGATTATGCATTCCCGGAGTGGATTTCCCCTGGGGCCAAACGCTTGATCTCTAATTTGTTGGTTGTCGACCCACTGAAGAGGTATTCCATCCCTGACATCATGAAGGATCCTTGGTTCCAAATTGGGTTCATGCGGCCCATTGCCTTTTCAATGAAGGAGACGGCTCTGGAGGATAACATTGACTTCAACGGGGACGATGCTGTTAGCAGTGGAAATGTTAGTGGTAACGACGATGGTAACAGCAGTAACAACGATGATGGGGAGCTGGTCGGGGCCAAGCCGGCTCGTCCGTCTTACAATGCTTTTGAGATAATATCGTCGTTATCGCACGGGTTTGATCTGAGGAATTTGTTTGAGACGAGGAAGCGGTCGCCGTCGATGTTCATATCGAAACACTCGGCATCGGCGGTGATGGCGAAGCTGGAGGCGGTGGCGAAGAAGCTGAACTTTAAGGTGACAGGGAAGAAGGAGTCCATGGTGAGGATGCAGGGGGCGACGGAAGGGAGGAAGGGGAAGCTGGGAATGACTGTGGAGGTGTTCGAGGTGGCGCCGGATGTGGCGGTGGTGGAGTTCTCTAAGTCGGCCGGAGACACGCTTGAATACATAAAGCTGTGCGAGGAACAAGTGAGGCCTTCGCTCAAAGACATCGTCTGGACATGGCAAGGGGACTCCCACTCCCGCCAGTGA	1395	0.5355	MDPGSNGTATGSSRNILFNKYEIGKILGQGNFAKVYHGRNLSTNDSVAIKVIKKERLQKEKLVKQIKREVSVMRLVRHPHIVELKEVMANKAKIFMVVEYVKGGELFAKVAKGKMKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVTDFGLSALPDQRRSDGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYAFPEWISPGAKRLISNLLVVDPLKRYSIPDIMKDPWFQIGFMRPIAFSMKETALEDNIDFNGDDAVSSGNVSGNDDGNSSNNDDGELVGAKPARPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKHSASAVMAKLEAVAKKLNFKVTGKKESMVRMQGATEGRKGKLGMTVEVFEVAPDVAVVEFSKSAGDTLEYIKLCEEQVRPSLKDIVWTWQGDSHSRQ	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst5g00044	464	SMART	serkin_6	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g00044	464	FunFam	Non-specific serine/threonine protein kinase	331	454	-	-
	Spst5g00044	464	Gene3D	Transferase(Phosphotransferase) domain 1	12	320	-	-
	Spst5g00044	464	ProSiteProfiles	NAF domain profile.	330	355	IPR018451	GO:0007165
	Spst5g00044	464	SUPERFAMILY	Protein kinase-like (PK-like)	17	276	IPR011009	-
	Spst5g00044	464	FunFam	Non-specific serine/threonine protein kinase	12	100	-	-
	Spst5g00044	464	Pfam	NAF domain	334	389	IPR004041	GO:0007165
	Spst5g00044	464	ProSiteProfiles	Protein kinase domain profile.	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g00044	464	Gene3D	Kinase associated domain 1, KA1	331	455	-	-
	Spst5g00044	464	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	12	450	-	-
	Spst5g00044	464	Pfam	Protein kinase domain	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g00044	464	ProSitePatterns	Protein kinases ATP-binding region signature.	27	54	IPR017441	GO:0005524
	Spst5g00044	464	CDD	CIPK_C	336	450	-	-
	Spst5g00044	464	Coils	Coil	49	69	-	-
	Spst5g00044	464	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	139	151	IPR008271	GO:0004672\|GO:0006468
	Spst5g00044	464	MobiDBLite	consensus disorder prediction	303	326	-	-
	Spst5g00044	464	MobiDBLite	consensus disorder prediction	303	323	-	-
	Spst5g00044	464	FunFam	Non-specific serine/threonine protein kinase	14	319	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g00044	Spst-Chr5	580640	582034	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst5g00044	14	462	CBL-interacting serine-threonine protein kinases	AT5G10930	59.424	0.0	555

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Spst5g00044		Pkinase	6.2e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst5g00044	-		-	gmx:100804244	806.979