Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00043 ATGGATTATTCATCATGGATTAACACCTCCTTGGATCTCAATATTATTCCCCGCAGGATTCATGAAGAATTTCCCAAAAAGGAGGTGGAAACCAATTTTTTCTCTCTGGGGCTGAAGAAATCTTCCGTAAAAGAAGAGTCTTCTGGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAGAACAAGAAGTTGACCGAAATGCTCACAGAGATGTGTGAGAACTACAATGCTTTGCGAAGCAATTTGATGGAATATATGAGGAAGAACCCTGATAAGGAGCTCAGTCCATCGAAGAAAAGAAAGTCAGAAAGCAGCCACAACAATAGTGTTCCAGTGGGAATCAACGGAAACTCTGAAAGCAGCTCAACCGATGAAGAATCATGCAAGAAACCAAAGGAAGACATAAAGACAACGGTTTCAAGAGTTTACGTGAGGACAGAAGCATCTGACTCGAGCCTTATTGTTAAAGATGGATATCAGTGGAGGAAATACGGTCAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCTTATTTCAAGTGCTCTTTCGCTCCAAGCTGCCCGGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCTTCTCATATGGAGGTAACCACAGGCTCCAACCGTGGTATGACCCTAGGTTCGGTACCATGTTCAGCGTCTCTTAGCTCTTCCACACCAATGGTTACCCTTGACTGGACCAAATCAAAGTCCCGCAGCGATTCAAAGAATATTTCTCCCAAAATCGATACACCAGAAGTCCCTAAGGTTTTGGTAGAACAGATGGCTACTTCCTTGACCAAGGATCCTAATTTCAGAGCAGCACTAGTTGCTGCAATCTCAGGAAAAATGTTGCACAATAATCGAGTACAAAATGAGTGA 939 0.4409 MDYSSWINTSLDLNIIPRRIHEEFPKKEVETNFFSLGLKKSSVKEESSGALVEELKRVSAENKKLTEMLTEMCENYNALRSNLMEYMRKNPDKELSPSKKRKSESSHNNSVPVGINGNSESSSTDEESCKKPKEDIKTTVSRVYVRTEASDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSHMEVTTGSNRGMTLGSVPCSASLSSSTPMVTLDWTKSKSRSDSKNISPKIDTPEVPKVLVEQMATSLTKDPNFRAALVAAISGKMLHNNRVQNE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00043 312 MobiDBLite consensus disorder prediction 107 123 - -
Spst5g00043 312 FunFam WRKY transcription factor 40 141 218 - -
Spst5g00043 312 MobiDBLite consensus disorder prediction 91 106 - -
Spst5g00043 312 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 305 IPR044810 GO:0003700
Spst5g00043 312 Pfam WRKY DNA -binding domain 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst5g00043 312 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst5g00043 312 SUPERFAMILY WRKY DNA-binding domain 154 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst5g00043 312 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst5g00043 312 MobiDBLite consensus disorder prediction 91 135 - -
Spst5g00043 312 Coils Coil 55 89 - -
Spst5g00043 312 Gene3D WRKY domain 139 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00043 Spst-Chr5 573900 575421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00043 4 310 WRKY Transcription Factor Family AT1G80840 54.969 6.52e-106 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst5g00043 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00043 - - gmx:100798375 531.946