Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00034 ATGGATTTCTCTTCTGCAAACCATCAAGCCATCTACTCAAAGTTTTCCATGATGCAAGCATTCCCACCTCGACTCACCACCACACTGCTTAATGTCAAACTCCTCATCGCCCCAAATGGTCTTCACGACCAATCATACGACATGGTTTTCTTACAAACCTTGTTCTTCCTTTTACTTGTAACATTCGGTCACTCCTTTCCACGGCGCCACCACTCCCACCCTTCTCATTCTTTACTCACCGATAGAGCTGCACTTCTGGAATTCAGAAAAACAATCATATCAGACCCGCGTTCCTCACTTGCTAACTGGGATGAAGCTGTTCCTGTGTGCAACTTCACAGGTGTTGAATGTGACAGATCCCATAACCGTGTTATACGACTAATCCTATATGATAAAGGTCTTGTGGGACTGCTTTCACCCATTCTTTCCAATCTCACTGGACTGCACAACCTTGAGATTGTTCGCAGTCACTTATTTGGCACCATTCCACCTGAATTTTCCAACCTCAGACGAGTTCACTGCATCATTCTTGAGGGCAACAACTTGCATGGCTCAATACCAGACTCCTTTTCCAAGCTTTCAAAGCTTAACATTCTAGTCATTAAGGAAAATAACATATCAGGTTCGCTTCCTCCATCTATCTTTTCCAACTGCACTCTGCTAAATGTTGTGGACTTCTCCAGCAACTCATTAACTGGTCAAATCCCGGAAGAGATTGGAAAGTGCCAAATTCTGTGGAGTATCAGTTTATACAATAATCAATTTACTGGGCAACTTCCTCTCTCGATGACCAATCTATCGCTTCAAAATTTAGATGTAGAGTACAATTATCTATCTGGTGAATTGCCTGCTATGTTTGTAAGCAGCTGGCCGTATCTCCTTTATCTTCATTTATCATACAACAATATGGTAAGCCATGATAGCAACACCAATCTTGATCCATTTTTCACAGCTCTCAGCAACAACAGTAATCTGGAGGAGCTTGAATTGGCAGGAATGGGCCTCGGGGGAAGGTTCACCAATACTGTCGCCGGCCAACTCACCAACCTAAGAACCCTGCTATTGCAGGAAAACCAAATTTTTGGATCAATTCCTCGCAGCTTAGCAAACCTTTCAAGGCTTTTCATTCTGAATTTAACATCCAATCTCCTAAATGGAACGATATCCCCTGATATATTCAGATTGCCAAAGTTGGAACAACTTTTCTTATCACACAACCTTTTCAAAATTCCAATTCCTGAAGCAATAGGCGAGTGTCTTAATCTGGGTCTACTGGATATGTCACACAACCAATTTTCAGGTAGGATTCCAGACAGTTTGGGAAATTTGGTTAGACTAAATTCTTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTCCCACATTGGGACGGTGCACTAATCTGTACAAGCTTGACTTGTCCCATAATAGATTAACAGGAAGCATCCCACTGAAACTGGCAGGCTTACATGAGATCAGAATTTTCATAAATGTCTCTCATAACAACCTTGAAGGTGACCTGCCAATTGAGCTCAGCAAATTAGAGAAGGTTCAGGAGATAGATCTTTCGTCTAACTACCTGACTGGAAGTATCTTCCCTCAGATAGCAGGATGCATTGCTGTTTCAATGATTAATTTTTCAAACAACTTTCTTCAAGGCGAGCTCCCACAGTCCCTGGGTGATCTGAAGAACCTTGCATCTTTTGATGTTTCACGGAATCAATTATCTGGATTGATACCAGCAAAACTTGGTAAAATTGAAACACTCACTTTTCTCAATTTATCATTTAACAATCTGGAAGGAAAGATTCCATCTGGTGGTATCTTTAATTCAGTTTCAAACTTGTCATTCTTAGGAAATCCAAAACTCTGTGGGACAATTGCAGGCATATCCTTGTGCTCTCAAAGGAGAAGAGGGATTCACACTCGTTTGTTATTGATTATATTAATTTTGGTTATCTTCGTATCAACCTTCTTGTCAATAATTTGCTGTGTAATTGGATGCAAGCGTCTGAAAGTAATCATCAGCTCTCACAGGACCCAGGCAAGCAAAAATGCAGCCAGACCCGAGTTGATTAGTAACTTCCCAAGAATCACGTATAAGGAACTGTCAGATGCCACTGAAGGATTTGACAATCAGAAACTTGTTGGATCAGGTAGTTATGGACATGTTTACAGGGGTGTTCTCGCAGACGGGACACCAATAGCAGTCAAGGTGCTGCATTTGCAATCTGGAAATTCTACCAAGAGCTTCAACAGAGAATGCCAAGTTTTGAAGAGAATTAGACACAGAAATCTTATAAGGATTATCACAGCATGTAGCCTACCCGATTTTAAGGCTCTTGTTCTACCTTATATGGCCAATGGCAGCTTGGAGAGCCGCCTCTATCCTTCTTCAGGATCATCAGACTTGAGCATTGTCCAGCGGGTGAATATTTGCAGTGATATAGCTGAAGGGATGGCCTATTTGCATCATCATTCTCCTGTCAGAGTCATACACTGTGATCTAAAACCAAGCAATTGTCTTCTCAATGATGACATGACAGCTCTCGTCTCTGATTTTGGGGTGGCAAGGCTAATTATGAGTGCTGGAGGTGGGGCTATAGAGAACATGGGGAACTCTAGTGCGAATTTGCTCTTTGGATCTATTGGATACATTGCTCCAGAATATGGATTTGGATCTAATTCATCTATCAAAGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTGACTAGAAGAAGACCAATAGATGACAGGTTTGTTGGTGGGTTAAGTCTGCAGAAATGGGTGAAGATTCATTTTCATGGAAGGGTAGAAAAAGTGGTAGATCCTGATTTGGTGACAGCCTCAAGAGATCAATCCCGAGAGGTTAGAAAGATGTGGGAAGTTGCAATTGCAGAGTTAATCGAATTGGGGCTTCTCTGCACACAGGAGTCACCTTCGACAAGACCAACCATGCTTGATGCAGCAGATGACTTAGATCGTCTCAAGAGATACCTTAATGGGGACACAACAGGAACTTTTGCCTCATCTCTGGGAATTTCATCTTCCACTATAGGTGGTGATGATATAGAAACTATTCTTAAACGAAGAGAAGCTGCTATTCGTGAGTTACTCAATCAACGTAACAATAAGGATAACAATACGGAGTCCTTGGCCGCTTCACAGTCATATTCATCTATTCCAGCTAGTCAAGTCATCACCAAACGCATGAACATTCCCCTTTTCGATGGCAACGATGCAGAAGATTGGATCTTTAAACTTCAAGAACTATTCTCCCTGTAG 3300 0.4173 MDFSSANHQAIYSKFSMMQAFPPRLTTTLLNVKLLIAPNGLHDQSYDMVFLQTLFFLLLVTFGHSFPRRHHSHPSHSLLTDRAALLEFRKTIISDPRSSLANWDEAVPVCNFTGVECDRSHNRVIRLILYDKGLVGLLSPILSNLTGLHNLEIVRSHLFGTIPPEFSNLRRVHCIILEGNNLHGSIPDSFSKLSKLNILVIKENNISGSLPPSIFSNCTLLNVVDFSSNSLTGQIPEEIGKCQILWSISLYNNQFTGQLPLSMTNLSLQNLDVEYNYLSGELPAMFVSSWPYLLYLHLSYNNMVSHDSNTNLDPFFTALSNNSNLEELELAGMGLGGRFTNTVAGQLTNLRTLLLQENQIFGSIPRSLANLSRLFILNLTSNLLNGTISPDIFRLPKLEQLFLSHNLFKIPIPEAIGECLNLGLLDMSHNQFSGRIPDSLGNLVRLNSLFLNNNLLSGTIPPTLGRCTNLYKLDLSHNRLTGSIPLKLAGLHEIRIFINVSHNNLEGDLPIELSKLEKVQEIDLSSNYLTGSIFPQIAGCIAVSMINFSNNFLQGELPQSLGDLKNLASFDVSRNQLSGLIPAKLGKIETLTFLNLSFNNLEGKIPSGGIFNSVSNLSFLGNPKLCGTIAGISLCSQRRRGIHTRLLLIILILVIFVSTFLSIICCVIGCKRLKVIISSHRTQASKNAARPELISNFPRITYKELSDATEGFDNQKLVGSGSYGHVYRGVLADGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLESRLYPSSGSSDLSIVQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNCLLNDDMTALVSDFGVARLIMSAGGGAIENMGNSSANLLFGSIGYIAPEYGFGSNSSIKGDVYSFGILVLEMVTRRRPIDDRFVGGLSLQKWVKIHFHGRVEKVVDPDLVTASRDQSREVRKMWEVAIAELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGDTTGTFASSLGISSSTIGGDDIETILKRREAAIRELLNQRNNKDNNTESLAASQSYSSIPASQVITKRMNIPLFDGNDAEDWIFKLQELFSL 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00034 1099 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Spst5g00034 1099 FunFam Leucine-rich repeat receptor-like protein kinase 79 237 - -
Spst5g00034 1099 Pfam Protein kinase domain 713 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00034 1099 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 318 995 - -
Spst5g00034 1099 SMART serkin_6 712 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00034 1099 ProSitePatterns Protein kinases ATP-binding region signature. 718 740 IPR017441 GO:0005524
Spst5g00034 1099 Gene3D Ribonuclease Inhibitor 268 641 IPR032675 -
Spst5g00034 1099 Gene3D Ribonuclease Inhibitor 195 267 IPR032675 -
Spst5g00034 1099 Gene3D Ribonuclease Inhibitor 80 194 IPR032675 -
Spst5g00034 1099 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 693 787 - -
Spst5g00034 1099 SUPERFAMILY RNI-like 126 409 - -
Spst5g00034 1099 CDD STKc_IRAK 718 1001 - -
Spst5g00034 1099 FunFam LRR receptor-like serine/threonine-protein kinase EFR 338 640 - -
Spst5g00034 1099 Pfam Leucine rich repeat N-terminal domain 80 118 IPR013210 -
Spst5g00034 1099 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 788 1010 - -
Spst5g00034 1099 Gene3D Transferase(Phosphotransferase) domain 1 788 1012 - -
Spst5g00034 1099 ProSiteProfiles Protein kinase domain profile. 712 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00034 1099 Coils Coil 1033 1053 - -
Spst5g00034 1099 Gene3D Phosphorylase Kinase; domain 1 693 787 - -
Spst5g00034 1099 ProSiteProfiles Leucine-rich repeat profile. 469 492 IPR001611 GO:0005515
Spst5g00034 1099 SMART LRR_typ_2 564 587 IPR003591 -
Spst5g00034 1099 SMART LRR_typ_2 193 217 IPR003591 -
Spst5g00034 1099 SMART LRR_typ_2 443 467 IPR003591 -
Spst5g00034 1099 SMART LRR_typ_2 395 419 IPR003591 -
Spst5g00034 1099 SMART LRR_typ_2 347 371 IPR003591 -
Spst5g00034 1099 SUPERFAMILY Protein kinase-like (PK-like) 690 998 IPR011009 -
Spst5g00034 1099 SUPERFAMILY L domain-like 368 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00034 Spst-Chr5 508532 516600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00034 80 988 Receptor kinase-like Gene Family AT3G47570 34.742 1.17e-165 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Spst5g00034 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00034 - - gmx:100815766 1667.51