Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00029 ATGGTGACCAGGTTTTCGTCAATTTCAACAAGGAAGCTATCAAATGCACTGACGATTCTGACTTCTGAAAAATGTATGGTTGCCACTAGTGACTACAATGAATTTCACAAAACTGTCAAGAAACATATTCTTGCAAACGTTTTGGGAGCCAATGCACAGAAGCGGCACCGTAGCCACAGAGAGACCATGCTGGAAAATATTTTGACCCAGTTTAGTGAACATGTGAAGACCTTCTCTGATTTGGCAGTTAACTTCAGAAATATATTCGCATCTGAACTTTTTGTATTAGCACTGAAGCAGGCTCTGGGAAGTAACGTTGAGTCCGTTTATGTGGAGGAGCTTGGGAGTAGATTAACAAAAGATGACATATATAAGATTCTAGTGCTTGATATGATGGAGGGTGCGATCGAGGTGGATTGGCGAGATTTCTTTCCATACTTGAAGTGGATTCCAAATAGCAGCGTGGAGACGAAAATTCGGAATTTGCATTTTCGGAGAAAAGCTGTCATGATGGCCTTGATGAATGACCAGAAGAAGAGAATGGGTTCAGGAAAGGAAGTAAACTGTTTTCTTGACTACCTGGTCTCCGAAGCTAAAGAACTGAGTGAAGATCAAATTTACATGCTAATCTGGGAGACAATTGTTGAGACATCTGATACTACATTAGTGACAACAGAATGGGCTATGTATGAACTTGCTAAAGACAAGACTCGTCAGGCCCGTTTGTTTGAGGAGATCCAGAATATATGTGGACAAGAAATGGTTAAAGAAGAGCAATTGTCTAAGCTACCTTACTTGGGTGCTGTATTCCATGAAACATTAAGGAAGCATAGTCCTGCTCCAATTGTGCCACTGAGATATGCTCATGAAGATACACAATTGGGAGGATATCATATTCCTGCTGGAAGCCAGATTGCAATTAATATATATGGATGCAACATGGACAGCAACAAGTGGGAAAATCCTCATGAATGGATGCCTGAGAGATTTTTTGATGAGAAATATGACCCCATGGATTTATTCAAGACCATGGCCTTTGGATCAGGGAAGAGGGTGTGTGCAGGGTCTCTTCAGGCCATGTTGATATCCTGCACCGCAATTGGGAGATTTGTGCAGCAATTTGAGTGGGAGCTGGGACAAGGGGAGGAGGAGAATGTGGATACAATGGGCCTTACCACCCACAGGCTCCAACCCCTGCTAGTGAAACTCAGGCCAAGAAATCAGTACATCAAAAGCGCCCTCGCAACACTCTTCCCAGAGACACCCCTCTGCAACGAAGCTCCGTTTACAGGGGTGTTACAAGTATATCTGGGGGCATACGACGACGAAGACGCTGCGGCACGTGCGTATGACTTGGCAGCATTGAAATATTGGGGACAAGAAACCATCCTCAATTTCCCCCTATCAAATTATGAACAACAGCTTAAGGAGATGGAGGATCAATCTAAGGAAGAGTATATTGGATCCTTGAGAAGAAAAAGTAGCGGCTTCTCTCGTGGAGTCTCAAAATTTAGAGGCGTCGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAATAAATATCTATACCTTGGGACTTACGGTACAGAAGAAGAAGCAGCGATGGCGTACGACATGGCGGCCATAGAATACCGTGGACTTAATGCGGTAACTAACTTTGACCTTAGTCGTTATATGAAATGTCTACCTCCAAAAGACCAAGACAACCCTAACCCTCAACCTCAAGCCCACCATTTCAGCCCAATCCGAAGCCCAAGCCCAACCACACCGTCTGGGTCTGAATCTGGCAATGCCACCGCAACATTGGACCCTCCACTGCCACCCCCGCCACCTTCTTCACCCTCCACCTCAATCCCTCCTCCTCCTCCTCCTTCTCGCTCGTTCCCTGAAGATATTCAGACTCTTTTTGAAACTCAAGATTCAGCTGGAATCTACACAGACACTGATGACATTATATTTGGCGACTTGACCTCCATCGCTTCACCAATTTTTCATTGTGACCTCAATGCTTAA 2034 0.4474 MVTRFSSISTRKLSNALTILTSEKCMVATSDYNEFHKTVKKHILANVLGANAQKRHRSHRETMLENILTQFSEHVKTFSDLAVNFRNIFASELFVLALKQALGSNVESVYVEELGSRLTKDDIYKILVLDMMEGAIEVDWRDFFPYLKWIPNSSVETKIRNLHFRRKAVMMALMNDQKKRMGSGKEVNCFLDYLVSEAKELSEDQIYMLIWETIVETSDTTLVTTEWAMYELAKDKTRQARLFEEIQNICGQEMVKEEQLSKLPYLGAVFHETLRKHSPAPIVPLRYAHEDTQLGGYHIPAGSQIAINIYGCNMDSNKWENPHEWMPERFFDEKYDPMDLFKTMAFGSGKRVCAGSLQAMLISCTAIGRFVQQFEWELGQGEEENVDTMGLTTHRLQPLLVKLRPRNQYIKSALATLFPETPLCNEAPFTGVLQVYLGAYDDEDAAARAYDLAALKYWGQETILNFPLSNYEQQLKEMEDQSKEEYIGSLRRKSSGFSRGVSKFRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAMAYDMAAIEYRGLNAVTNFDLSRYMKCLPPKDQDNPNPQPQAHHFSPIRSPSPTTPSGSESGNATATLDPPLPPPPPSSPSTSIPPPPPPSRSFPEDIQTLFETQDSAGIYTDTDDIIFGDLTSIASPIFHCDLNA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00029 677 SMART rav1_2 428 473 IPR001471 GO:0003700|GO:0006355
Spst5g00029 677 SMART rav1_2 503 567 IPR001471 GO:0003700|GO:0006355
Spst5g00029 677 Gene3D AP2/ERF domain 502 563 IPR036955 GO:0003700|GO:0006355
Spst5g00029 677 Gene3D AP2/ERF domain 399 469 IPR036955 GO:0003700|GO:0006355
Spst5g00029 677 SUPERFAMILY Cytochrome P450 3 406 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst5g00029 677 Pfam AP2 domain 502 553 IPR001471 GO:0003700|GO:0006355
Spst5g00029 677 Gene3D Cytochrome P450 1 398 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst5g00029 677 ProSiteProfiles AP2/ERF domain profile. 367 467 IPR001471 GO:0003700|GO:0006355
Spst5g00029 677 CDD CYP77_89 1 399 - -
Spst5g00029 677 PRINTS E-class P450 group I signature 225 251 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst5g00029 677 PRINTS E-class P450 group I signature 308 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst5g00029 677 PRINTS E-class P450 group I signature 343 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst5g00029 677 PRINTS E-class P450 group I signature 353 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst5g00029 677 PRINTS E-class P450 group I signature 267 285 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst5g00029 677 SUPERFAMILY DNA-binding domain 502 563 IPR016177 GO:0003677
Spst5g00029 677 ProSiteProfiles AP2/ERF domain profile. 503 561 IPR001471 GO:0003700|GO:0006355
Spst5g00029 677 MobiDBLite consensus disorder prediction 568 637 - -
Spst5g00029 677 Pfam Cytochrome P450 23 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst5g00029 677 MobiDBLite consensus disorder prediction 609 635 - -
Spst5g00029 677 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 346 355 IPR017972 GO:0005506|GO:0016705
Spst5g00029 677 MobiDBLite consensus disorder prediction 578 607 - -
Spst5g00029 677 CDD AP2 502 563 IPR001471 GO:0003700|GO:0006355
Spst5g00029 677 PANTHER ENT-KAURENE OXIDASE, CHLOROPLASTIC 1 407 IPR044225 GO:0005506|GO:0009686|GO:0010241|GO:0020037|GO:0052615
Spst5g00029 677 FunFam AP2-like ethylene-responsive transcription factor 502 563 - -
Spst5g00029 677 SUPERFAMILY DNA-binding domain 434 469 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00029 Spst-Chr5 480876 489242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00029 1 406 Cytochrome P450 AT5G25900 64.373 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst5g00029 p450 3.3e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00029 K04122 - gmx:100802970 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00029 5 480876 489242 Spst5g00029 5 480876 489242 ECH