Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00028 ATGAAGAAGACGAATGAGTTCTCAGTGTCAAGCACGCGCACTTACAGTTCTCTCTATTTCAATCCTCTCAACAATCCCACCCACTGCCGGAGTTCCAGCACCGACTGTGTCCGCAAACCTCACTTCGAAATTCAAGATGACCACCACGACAAGGAAAACCAAAACGCCAACTCCAATGCGTCCTCTCCTCTGCCCAAGCCCAAGCCCAAGCCCTTCAGGTCTTTCTCCACAGACAGGATCTTGAAGCCCTCCTCGCTTGAATTCTGCATGCAGATCAACGACCTTCAAACCCCCCTCAACATTTGGGACTACTCTGATTCCGAGTCAGCTCCTGCTTCCTCCTGGTCCACGCTCCCCAACAAGTCCTTGATCTGTAGACCCTTGCCTTTGGATATTGGAAGGTGCACATGTTTCATTGTCCAGGAGCCAACGCCCCATGGACTCTCAGGGGGCACTTTCTTCTCTCTTTATACCAATGTAATTCAACTCAACTTCTCTGGTCATTTCTTTAGACTCACACTATATGATTATGGATGTGGTAGTAATGAATTAGTGTATTACAATGAAGGGCAGGGACGGCAGAATAGGAAACTAGCTGTGGCCTATCACAAGCGCCGGAATGGGAGGTCTTACTTCATCATTGCTCAGAATGTGAAAGGACTACTCTCCCATTCTGATGATACTTTTCTTGGCACCATAACAGCTAACCTCATGGGCTCTAAATACCACATTTGGGATCAGGCGTATCGTCGTAACTCCCGTAGTAAACAACCAAAGCCACCTCTTGCTGTTGTGACCTATATACCTACCATAACAACATGTACAGGAAGTCACAGAACCATGAGGGTATATATACCCAAGCATCAATATATGTCACTGAAGAACACAACACAGGTACAACATATAAAAGGATTGCCTATGAATTGGGAGGAGAAGTTGGACAAGGTCCATCAACTATTCTCTAAGGTTCCACTTTACAACAAGATTTCGAAGCAATACGAGCTTGACTTTAGAGATAAAGGAAAGGCAGGAGTTAGAATCCAAAGATCAGTTAAAAATTTCCAGCTTACTTTAGAGGAGAATGGGAGGCAGACGATCCTGCAGCTAGGGAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGGCATCCTTTGACAGGTTACCAAGCGTTTTGCATATGTTTGGCTTCCATGGATGCAAAGCTTTGTTGCACAGTGTAG 1221 0.4554 MKKTNEFSVSSTRTYSSLYFNPLNNPTHCRSSSTDCVRKPHFEIQDDHHDKENQNANSNASSPLPKPKPKPFRSFSTDRILKPSSLEFCMQINDLQTPLNIWDYSDSESAPASSWSTLPNKSLICRPLPLDIGRCTCFIVQEPTPHGLSGGTFFSLYTNVIQLNFSGHFFRLTLYDYGCGSNELVYYNEGQGRQNRKLAVAYHKRRNGRSYFIIAQNVKGLLSHSDDTFLGTITANLMGSKYHIWDQAYRRNSRSKQPKPPLAVVTYIPTITTCTGSHRTMRVYIPKHQYMSLKNTTQVQHIKGLPMNWEEKLDKVHQLFSKVPLYNKISKQYELDFRDKGKAGVRIQRSVKNFQLTLEENGRQTILQLGRVGKSKFVMDYRHPLTGYQAFCICLASMDAKLCCTV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00028 406 Pfam Tub family 186 399 IPR000007 -
Spst5g00028 406 PRINTS Tubby superfamily signature 229 253 IPR000007 -
Spst5g00028 406 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Spst5g00028 406 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Spst5g00028 406 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Spst5g00028 406 PANTHER TUBBY-RELATED 89 403 - -
Spst5g00028 406 MobiDBLite consensus disorder prediction 44 73 - -
Spst5g00028 406 SUPERFAMILY Tubby C-terminal domain-like 181 405 IPR025659 -
Spst5g00028 406 Gene3D Tubby Protein; Chain A 120 399 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00028 Spst-Chr5 478183 480389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00028 72 299 TUB Transcription Factor Family AT1G16070 48.387 5.39e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Spst5g00028 Tub 9.5e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00028 K19600 - gmx:100803500 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00028 5 478183 480389 Spst5g00028 5 478183 480389 ECH