Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00026 ATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAACCCTCAGACACCATTATGGCGGTCAAGAAAAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGTCAGCAACTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAACCGACAATAAGGTCTCTGAGGATGGATTTCTTGTTGTCATGCTTAGTAAGAGTAAAACCTTGGGATCTGCTGGCACTTCATCAAATCAGGCATCTGGTGATTGGACATGTGTATCTGCAAACAACAATGTAGCTGCCACAGATGTCACAACTACAAATGTGACTACAGATACTTATGGCCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCAAATTATGGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTTAGTCGTGCTCTCCGAGCAGCTTACAATAACCCAGAGCGTGCTGTGGACTACCTGTATTCTGGAATTCCTGAAGCAGCAGAAATTGCTGTGCCTGCTGCTCCTTACCCAATTAGTCAGACAACTGAAACAGGTGGGGTCAACGCGGGAGCTATTCCTGGGGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGACAATTTCTGGTGTTGGAGCTGGAATTGGGTCACTTGACTTTCTTAGAAACAATCCCCAGTTTCAAGCACTGCGAACAATGGTACAATCCAATCCACAAATTCTGCAGCCTGTACTTCAGGAACTTGGAAAGCAGAATCCTGGTCTCTTAAGACTAATTCAAGAGCATAATGCTGAGTTCCTCCAGTTGATTAACGAACCTGTTGAGGGTTCAGAAGGTGATATATTTGATCAAGCTGAGCAAGACATGCCTCATGCTATCAATGTGACGCAGGCAGAGCAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGACAGAGCCTCAGTCATAGAGGCATTTTTAGCATGTGATCGTGACGAGCAATTGGCAGCGAACTACTTATTGGAAAATGCTGGAGATTTTGAGGATTAA 1065 0.4432 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLTDNKVSEDGFLVVMLSKSKTLGSAGTSSNQASGDWTCVSANNNVAATDVTTTNVTTDTYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRDTVSRALRAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPISQTTETGGVNAGAIPGVPNSSPLNMFPQETISGVGAGIGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIQEHNAEFLQLINEPVEGSEGDIFDQAEQDMPHAINVTQAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00026 354 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 129 172 IPR015940 -
Spst5g00026 354 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Spst5g00026 354 Pfam UBA/TS-N domain 310 345 IPR015940 -
Spst5g00026 354 Pfam UBA/TS-N domain 131 169 IPR015940 -
Spst5g00026 354 Gene3D - 124 174 - -
Spst5g00026 354 FunFam UV excision repair protein RAD23 homolog 124 174 - -
Spst5g00026 354 SMART uba_6 131 171 IPR015940 -
Spst5g00026 354 SMART uba_6 310 347 IPR015940 -
Spst5g00026 354 NCBIfam UV excision repair protein Rad23 1 353 IPR004806 GO:0006289
Spst5g00026 354 SUPERFAMILY XPC-binding domain 227 292 IPR036353 GO:0003684|GO:0006289|GO:0043161
Spst5g00026 354 Gene3D - 220 285 IPR036353 GO:0003684|GO:0006289|GO:0043161
Spst5g00026 354 SMART ubq_7 1 75 IPR000626 GO:0005515
Spst5g00026 354 CDD Ubl_Rad23 1 74 - -
Spst5g00026 354 FunFam UV excision repair protein RAD23 B 219 285 - -
Spst5g00026 354 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 308 348 IPR015940 -
Spst5g00026 354 SMART CBM 227 270 IPR006636 -
Spst5g00026 354 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 343 - -
Spst5g00026 354 FunFam UV excision repair protein RAD23 1 80 - -
Spst5g00026 354 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Spst5g00026 354 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Spst5g00026 354 Gene3D - 1 80 - -
Spst5g00026 354 Gene3D - 301 349 - -
Spst5g00026 354 Pfam XPC-binding domain 229 284 IPR015360 GO:0003684|GO:0006289|GO:0043161
Spst5g00026 354 FunFam UV excision repair protein RAD23 homolog 301 349 - -
Spst5g00026 354 SUPERFAMILY UBA-like 128 178 IPR009060 GO:0005515
Spst5g00026 354 CDD UBA1_Rad23_plant 125 174 - -
Spst5g00026 354 SUPERFAMILY UBA-like 290 351 IPR009060 GO:0005515
Spst5g00026 354 PRINTS DNA repair protein Rad23 signature 255 277 IPR004806 GO:0006289
Spst5g00026 354 PRINTS DNA repair protein Rad23 signature 304 320 IPR004806 GO:0006289
Spst5g00026 354 PRINTS DNA repair protein Rad23 signature 336 351 IPR004806 GO:0006289
Spst5g00026 354 PRINTS DNA repair protein Rad23 signature 321 335 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00026 Spst-Chr5 453441 459056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00026 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.20e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00026 K10839 - gmx:100804038 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00026 5 453441 459056 Spst5g00026 5 453441 459056 ECH
Spst5g00026 5 453441 459056 Spst4g02511 4 65215239 65220903 PCT