Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00021 ATGAGTGACGAAAGACGTGGTTTGATCCGATGGATGAGAGGAGTTGGGGTTGGTGAGACAGAGCCACAACACAATACTATGGTTTGCCTTAATCTTCATGGGAGGGGGTGGATTTCATTGTGGTGGGTGCCGGGTAGTAGCAGTAGTAGAATAATGGTATCCAAGGATGGGAGTGGAGATTATAGAACGGTGGGTGAAGCCATTCTGAGCGCTCCGGACATGAGTGACAGACCTTACACCATTCACGTTCGAGAAGGCACTTATCAAGAGTATCTATTCATTCCTCCTCACAAGACTAATATCAAGCTCCTCGGAGATGGACCTCACCACACCATAATAGTGGGCTACCAAAATGGTTCCACCATAGACATTCGAGGAGATGGGTTCATGGCAGAGAAGATGGGATTTGCGAACTGGGCAGGGCTAAACGCAAGCGCTGCGGTGGCGGTGAGGAACGAAGCAGACAAGAGCATATTCTTCGAATGCTCCATCGAAGGCCTGCAAGACACCCTGTGGGCGGTTTCGGGGCGTCAGTTCTACAAAAAGTGCGAGATCTACGGCACAGTGGACTTCATCTACGGCAGCGCAGCGGCGGTGTTCCAGGACTGCATGGTGTACGCGCGTTACAGAGAGTACGTGACGTTCACGGCTCAGTCGCGAGAGGATCCGAATGAGAAGAGTGGGTTCAGTTTCCAGAGATGCGACTTCAGAATGTCCCCTGAGGATGAGGGTAGAAAGTCAGAGGTCCGTGCTAGCTTGGGTCGTCCCTTGAGACCCTATTCCACCGTGGCTATTCTTCATTCCTACATTGACTCCATCGTGGACCCTAAAGGTTGGGAGCCCATGCCACACCAGCCCACTGACAAACTCACCTACACCGAATTTCAGAATTTTGGGCCGGGCTCTAACACTGATGCCAGAGTTAAGTGGCCTGGTGTCACCGTCCTTCGCCACCCAGCCCAAGCAGCCCATTTCACTGCTTCCTCTCTCTTAGATGCAGACTCTTGGATTCCCTCCTCGGGAGTCCCCTATGACAATGTACTCTAG 1047 0.5215 MSDERRGLIRWMRGVGVGETEPQHNTMVCLNLHGRGWISLWWVPGSSSSRIMVSKDGSGDYRTVGEAILSAPDMSDRPYTIHVREGTYQEYLFIPPHKTNIKLLGDGPHHTIIVGYQNGSTIDIRGDGFMAEKMGFANWAGLNASAAVAVRNEADKSIFFECSIEGLQDTLWAVSGRQFYKKCEIYGTVDFIYGSAAAVFQDCMVYARYREYVTFTAQSREDPNEKSGFSFQRCDFRMSPEDEGRKSEVRASLGRPLRPYSTVAILHSYIDSIVDPKGWEPMPHQPTDKLTYTEFQNFGPGSNTDARVKWPGVTVLRHPAQAAHFTASSLLDADSWIPSSGVPYDNVL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00021 348 PANTHER PECTINESTERASE 41 338 - -
Spst5g00021 348 Pfam Pectinesterase 51 333 IPR000070 GO:0030599|GO:0042545
Spst5g00021 348 FunFam Pectinesterase 48 344 - -
Spst5g00021 348 Gene3D - 48 348 IPR012334 -
Spst5g00021 348 SUPERFAMILY Pectin lyase-like 48 345 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00021 Spst-Chr5 434515 438235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00021 36 344 Carbohydrate Esterase AT3G60730 40.308 2.45e-76 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00021 K01051 - gmx:102665195 499.204