Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00020 ATGGCTATTGAAAGCGAACAAGGAAGGGAAATCATTTTCAGGTCCAAGCTTCCGGATATCTACATCCCCAAACACCTTCCCCTCCACGCATACTGCTTTCAGAATCTGCAGGAGCACGGGTCACGCCCCTGCTTGATCAATGCCCCCACGGGAGCCGTCTACACCTACTTCGACGTCGACGCCACAGCCCGGAAGGTGGCGTCGGGCCTCAACAGAGTGGGCGTGCGACAGGGCGAGGTCATCATGATCCTGCTCCCCAATTGCCCCGAATTCGTGTTTGCGTTTCTTGGGGCGTCTTACCGGGGCGCCATGGCCACTGCGGCTAACCCCTTCTTCACTCCGGCGGAGATTGCGAAGCAAGCCAAGGCATCCAATGCGAAGGTGCTCATCACGCAGGCCTCTTACTATGAGAAGGTGAAGGAGCTGGAGGTGAAGGTGGTGTTTGTGGACTCTTGTCCGGCTGAGGCAGGTGACGGTGAGGATCATATCCATTTCTCGCAGCTGATTGAGGAAAGCGGCGAGATGGAAGAGGTGGAGATAAGAGGGGATGACGTGGTGGCACTGCCGTATTCGTCGGGGACAACGGGGCTTCCGAAAGGAGTGATGCTGACGCACAAGGGGCTTGTGACGAGCATCGCTCAGCAGGTGGACGGTGAGAATCCGAACCTCTACTACCACTGCGAGGACACCATCCTCTGCGTGCTTCCTCTCTTCCACATCTACTCCCTCAACTCTGTTTTGCTCTGTGGCTTGCGTGCCAAGGCCACCATTCTCCTCATGCCCAAGTTCGAGATCAAGGCCTTGCTCGGTCTCGTTCACAAGCACAGAGTCACCATTGCCCCCGTTGTCCCACCCATCGTTCTGGCCATTGCCAAGTCACCCGATCTCACCAACTATGACCTTTCTTCCATCAGGGTCTTGAAGTCCGGGGGTGCCCCTCTCGGTAAAGAACTCGAAGACACTCTCCGTGCCAAATTCCCCAACGCCAAACTCGGTCAGGGTTACGGAATGACCGAGGCGGGGCCTGTGCTAACAATGTCCTTAGCTTTTGCTAAGGAAGCCATGGACGTAAAAGCCGGTGCATGTGGAACAGTTGTCAGAAATGCAGGGATGAAGATTGTGGATCCTGAAACCGCCATTTCCTTACCTCGAAACCACGCCGGTGAAATTTGCATAAGAGGTGACCAGATTATGAAAGGTTATCTAAATGATAGAGAGGCAACAGAGAGAACGATAGACAAAGAGGGTTGGTTGCACACAGGTGACATCGGGTACATCGACGATGATGACGAGTTGTTCATCGTTGATAGGTTAAAGGAATTGATCAAATACAAAGGATTTCAGGTCGCTCCTGCTGAACTTGAAGCCCTCCTTCTCACCCACCCTACCATCTCTGATGCCGCCGTCGTCCCAATGAAGGATGAAGCAGCGGGTGAGGTACCCGTTGCGTTTGTGGTGAGATCAAATGGTTTTACCCACACAACCGAGGATGAGATTAAGCAATTTATCTCCAAACAGGTGGTATTTTACAAAAGAATAAACAGAGTCTTCTTCATTGATGCAATCCCCAAGTCACCATCAGGCAAAATTTTGCGTAAAGATCTTCGAGCAAAGCTAGCAGCAGCTCCTTCATCAGCACCACCAACACCAGCTGTTCCAAAATGA 1665 0.5255 MAIESEQGREIIFRSKLPDIYIPKHLPLHAYCFQNLQEHGSRPCLINAPTGAVYTYFDVDATARKVASGLNRVGVRQGEVIMILLPNCPEFVFAFLGASYRGAMATAANPFFTPAEIAKQAKASNAKVLITQASYYEKVKELEVKVVFVDSCPAEAGDGEDHIHFSQLIEESGEMEEVEIRGDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHCEDTILCVLPLFHIYSLNSVLLCGLRAKATILLMPKFEIKALLGLVHKHRVTIAPVVPPIVLAIAKSPDLTNYDLSSIRVLKSGGAPLGKELEDTLRAKFPNAKLGQGYGMTEAGPVLTMSLAFAKEAMDVKAGACGTVVRNAGMKIVDPETAISLPRNHAGEICIRGDQIMKGYLNDREATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPTISDAAVVPMKDEAAGEVPVAFVVRSNGFTHTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAAPSSAPPTPAVPK 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00020 554 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Spst5g00020 554 CDD 4CL 22 535 - -
Spst5g00020 554 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 439 - -
Spst5g00020 554 SUPERFAMILY Acetyl-CoA synthetase-like 15 541 - -
Spst5g00020 554 Gene3D - 439 542 IPR045851 -
Spst5g00020 554 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Spst5g00020 554 Gene3D - 6 438 IPR042099 -
Spst5g00020 554 Pfam AMP-binding enzyme C-terminal domain 453 529 IPR025110 -
Spst5g00020 554 FunFam 4-coumarate--CoA ligase 2 440 542 - -
Spst5g00020 554 Pfam AMP-binding enzyme 34 444 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00020 Spst-Chr5 431671 434310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00020 5 507 Monolignol Biosynthesis Gene Families AT1G51680 68.677 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00020 K01904 - gmx:547944 891.723