Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00019 ATGGAAAAGGAAGTGTTATGGGCTCTGACTCATGCTCGATTGAACATCATGGATCTTAGTGATCTTAACAAAGTCTGGGAAATTAAGCCACTCAAAAGAATTGGAGAAGATGACGCAAGGAAGATTCTTGAAAAGGTAGCTAAGCAGGTTCAACCAATAATGCGAAAAAGAAAATGGAAAGTCAATGTTCTTTCTGAATTCTGCCCTGCAAATCCATCACTTTTAGGGCTAAATATAGGACCAGGTGCAGAAATAAAGATAAGACTGCGGAGGCCTAACTGCGAGTGGGATTTCTTCCCTTATGAGCAGATTCTTGATACCATGTTGCACGAGCTTTGCCATAATGAACATGGTCCCCACAACGCTCAGTTTTATAAACTTTTGGAAGAAATTAGAAAGGAATGTGAAGAACTGATGGTCAAAGGGATTAGTAGCACTGGGAAAGGATTTGAACTTAATGGAAGACGTCTCGGTGGGTTCTCCCAGCAACCACCTTTGTCATCTCTTCGCCAGACTGCATTGGCAGCTGCTGAAAGCAGAGCACATCATAGAGGTTTGCTTCCTTCTGGACCTCAATATTTAGGTGGTGATAAAAATATCAAGTCTTCTCTGAGTCCAATACAAGCTGCTGCGATGGCTGCTGAAAGGAGACTGCACGATGACATGTGGTGTGGGTCAAAGTCTCAAGGGGGTGACCCTTATATAAAGGACAGCACAAGTTCTAGTGGACCTTCTGCAAGATCTATTCGAACTTCAGCTATTCAATCTGCAACAGCCGAAGGAACATTTGAGGGAGCAAAAAGGCAGTGCAAAACTTGCACTTTATTAAATAAGCCATTAGCATTGGTATGCGAAGCCTGTGGAACAGAGATGCAGAAAGATGTTTCCAAGTTCAAAGTTTGGTCTTGCAAATTTTGTACTCTAGAAAACGGTGTTGAGCAAGATAGATGCCTATGTTGTGGAGAATGGAGATATTCATATGGCCCATCAGTGTCAATCCATTTCAGCGGAAGGAGCGACTCGGAGTGGATTGGAGTGGAGTTGAATCCATATTTTGTTGGCATAAACACGAGGCTGCCTGGATCTGAGCTCGGGTGTGCTTCGCAGATGGGTTCGGTGGAGGAGAAGATAGAGCGCGATCCTTTCGACAACCTTGACAGTGACGATGATGACCACACTCCCTTCGCCTCTTCCCCATCCGCCTCTAAAGTCCATCCCTTCAATTTCGAGACACGCGTTGTTAATATCCGGAGCTCATCCATCTTCAAAATTACACGTATCAGCAGGAGTATATATTTTGTCTTAATTAAGGCCAAGATCAACATCTTGCTTCCTTTTGGTCCATTAGCCATTTTCCTCCATTATCTAACCGGACACCATGGATGGGTCTTCTTCTTCACGTTATTGGGTATTGCTCCTTTGGCCGAACGTCTCGGTTATGCTACTGAGCAGCTTGCCTTCTTCACAGGACCAACAGTTGGGGGTTTGCTTAATGCCACATTCGGCAATGCGACTGAAATGATCATCTCAATTTATGCATTGAAAAGCAACATGATAAGGGTTGTTCAGCAATCTTTACTTGGTTCTATCCTGTCAAATATGCTTCTGGTTCTTGGCTGTGCATTCTTTACTGGTGGCATTGCTCACTACAAAAAAGTACAGGAATTTGATAAGGCAGCTGCCGTTGTGAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATTCTGTTTCCTGCTGTGCTTTACTTTACTCACTCAGAAGTTCATGAAGGGAAGTCAGTGTTGTCTCTATCAAGATTTAGCAGCTGCATAATGCTAGTGGCATATGCAGGCTTCCTTTTCTTTCAACTTAGAAGTCAGCAAAATGTTTATAGTCCAGTTAATGAGGAAGGAGAAAATGGGGACAATTCTGATGTGGAAGAAGAACTTGAATTAACTCAGTGGGAGGCAATAACCTGGCTTGCTATTTTGACAGCATGGGTATCTATATTATCTGGATACCTTGTAGATGCCATAAAGGGAGCATCTGAGTCATTAAATATGTCAGTGGCTTTTATTTCTGTCATCTTGCTGCCAATTGTAGGCAACGCTGCAGAACATGCCAGTGCCATCATGTTTGCCGTGAAGGACAAGCTTGACATTACTATTGGAGTTGCCATTGGATCGTCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACCGCCACACTTTTTATCACTGTGTTGGTAGTTGCGTTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTTATACTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACATGTAGACCCTAAAAGTGGTGAGTTACTAAGAATATACTGCGTAATTTCACAATTGCACAAGATTTATGTGATGAGGCAGAATCTAGATGAATCTCCAATATTTCTTTTGTGCTGA 2499 0.425 MEKEVLWALTHARLNIMDLSDLNKVWEIKPLKRIGEDDARKILEKVAKQVQPIMRKRKWKVNVLSEFCPANPSLLGLNIGPGAEIKIRLRRPNCEWDFFPYEQILDTMLHELCHNEHGPHNAQFYKLLEEIRKECEELMVKGISSTGKGFELNGRRLGGFSQQPPLSSLRQTALAAAESRAHHRGLLPSGPQYLGGDKNIKSSLSPIQAAAMAAERRLHDDMWCGSKSQGGDPYIKDSTSSSGPSARSIRTSAIQSATAEGTFEGAKRQCKTCTLLNKPLALVCEACGTEMQKDVSKFKVWSCKFCTLENGVEQDRCLCCGEWRYSYGPSVSIHFSGRSDSEWIGVELNPYFVGINTRLPGSELGCASQMGSVEEKIERDPFDNLDSDDDDHTPFASSPSASKVHPFNFETRVVNIRSSSIFKITRISRSIYFVLIKAKINILLPFGPLAIFLHYLTGHHGWVFFFTLLGIAPLAERLGYATEQLAFFTGPTVGGLLNATFGNATEMIISIYALKSNMIRVVQQSLLGSILSNMLLVLGCAFFTGGIAHYKKVQEFDKAAAVVNSGLLLMAVMGILFPAVLYFTHSEVHEGKSVLSLSRFSSCIMLVAYAGFLFFQLRSQQNVYSPVNEEGENGDNSDVEEELELTQWEAITWLAILTAWVSILSGYLVDAIKGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGELLRIYCVISQLHKIYVMRQNLDESPIFLLC 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00019 832 NCBIfam calcium/proton exchanger 443 793 IPR004798 GO:0006816|GO:0015369
Spst5g00019 832 NCBIfam calcium/proton exchanger 434 793 - -
Spst5g00019 832 Gene3D - 638 794 IPR044880 -
Spst5g00019 832 Gene3D - 491 629 IPR044880 -
Spst5g00019 832 Pfam Sodium/calcium exchanger protein 653 790 IPR004837 GO:0016020|GO:0055085
Spst5g00019 832 Pfam Sodium/calcium exchanger protein 462 617 IPR004837 GO:0016020|GO:0055085
Spst5g00019 832 FunFam Vacuolar cation/proton exchanger 638 794 - -
Spst5g00019 832 SMART zf_4 299 323 IPR001876 -
Spst5g00019 832 SMART zf_4 266 290 IPR001876 -
Spst5g00019 832 ProSiteProfiles WLM domain profile. 16 219 IPR013536 -
Spst5g00019 832 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 416 798 IPR004713 GO:0006812|GO:0008324|GO:0016020
Spst5g00019 832 MobiDBLite consensus disorder prediction 229 251 - -
Spst5g00019 832 FunFam Vacuolar cation/proton exchanger 491 630 - -
Spst5g00019 832 MobiDBLite consensus disorder prediction 232 251 - -
Spst5g00019 832 Pfam WLM domain 24 218 IPR013536 -
Spst5g00019 832 ProSiteProfiles Zinc finger RanBP2 type profile. 297 326 IPR001876 -
Spst5g00019 832 ProSitePatterns Zinc finger RanBP2-type signature. 301 320 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00019 Spst-Chr5 388430 402120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00019 429 798 Antiporters AT3G13320 74.394 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00019 K07300 - gmx:100806000 741.495