Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00016 ATGGCAGACAAAGCTTTGGTGCGAAGGCTGTCAGCGTGCGAAACAATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTGAATCAGATGACTGTAGTTGAGGCATATGTTGGGAGGAAGAAATTAAATCAACCAGATGACTTGACAAAATTGCATCCGCAAGTTCTATCTCTGATAAATGAGGGCATTTCACAAAATACAACTGGCAATGTTTTTGTGCCTAAGGATGGTGGAGCGATGGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAATTTTGATTTTATTAGATCAAATTCAACAGTTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGCGTTGCTGTGAAACTGCCGGACAATGTAGTTCATATTCATTGGAAAGGAGCTGCGGAGATAGTTCTAGGAACGTGTACTCAATATCTTGATTGTGATGGTCACTTGAAACCTATTGAAGAAGAGAAGGTATTCTTCAAGAAAGGTATCGAAGACATGGCTACTCAGAGCTTGCGCTGTGTTGCCATTGCATACAGATCGTATGATTTAAATAAAATTCCATCTAATGAGGAGGAATTAGCCCAGTGGTCCTTGCCAGAACATGAGCTGGTCTTGCTTGCTATTGTTGGAATAAAGGACCCTTGTCGCCCTGGTGTCAAGGAAGCTGTGAGAGTATGCACTGAAGCTGGCGTTAAGGTACGCATGGTTACCGGTGATAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGTGGAATACTGATGTCTAATGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCCACTACGTAAAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAACGATGCCCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATTATCTTGGATGATAACTTTGCATCTGTAGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTTGCGGCTCTTGTAATAAATGTTGTGGCATCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATAATGGACACACTTGGAGCTCTTGCACTGGCTACGGAACCGCCAACAGACAGCCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGGTTGTACAGGCCCTCTATCAAGTCATTGTTCTTCTAGTTCTTCACTTCGGTGGTGAAAGTATTCTACATAATAAGGATTCTGCAGCCCATACCATACAAGTGAAGAATACTTTAATTTTCAATGCATTCGTCTTTTGCCAAATATTCAACGAGTTCAACGCCCGAAAACCAGAAGAGATGAATGTGTTCCAGGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAATGACCTTTGTGCTTCAGATAATCATCATCGAGTTCCTTGGAAAATTTACAACGACAGTGAAGCTTAGCTGGAACCTGTGGCTTGCCTCTCTTTGTATTGGGCTTTTAAGCTGGCCTCTTGCCATAGTAGGAAAATTCATTCCAGTTCCCAAAACACCACTGTCTCGATATTTAACCAAGTCACTCAGGAGATTGAAGATATCCAAGTCCCATGCAACTCAATAG 1764 0.4229 MADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNQPDDLTKLHPQVLSLINEGISQNTTGNVFVPKDGGAMEVSGSPTEKAILSWAVKLGMNFDFIRSNSTVLHVFPFNSEKKRGGVAVKLPDNVVHIHWKGAAEIVLGTCTQYLDCDGHLKPIEEEKVFFKKGIEDMATQSLRCVAIAYRSYDLNKIPSNEEELAQWSLPEHELVLLAIVGIKDPCRPGVKEAVRVCTEAGVKVRMVTGDNLQTAKAIALECGILMSNEDAVEPNIIEGKTFPLRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVASISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLVVQALYQVIVLLVLHFGGESILHNKDSAAHTIQVKNTLIFNAFVFCQIFNEFNARKPEEMNVFQGVTKNRLFMGIVGMTFVLQIIIIEFLGKFTTTVKLSWNLWLASLCIGLLSWPLAIVGKFIPVPKTPLSRYLTKSLRRLKISKSHATQ 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00016 587 ProSitePatterns E1-E2 ATPases phosphorylation site. 25 31 IPR018303 -
Spst5g00016 587 Gene3D - 33 230 IPR023299 GO:0000166
Spst5g00016 587 Pfam Cation transporting ATPase, C-terminus 384 559 IPR006068 -
Spst5g00016 587 SFLD p-type atpase 5 351 IPR044492 -
Spst5g00016 587 SUPERFAMILY HAD-like 21 404 IPR036412 -
Spst5g00016 587 PRINTS P-type cation-transporting ATPase superfamily signature 323 335 - -
Spst5g00016 587 PRINTS P-type cation-transporting ATPase superfamily signature 23 37 - -
Spst5g00016 587 PRINTS P-type cation-transporting ATPase superfamily signature 299 318 - -
Spst5g00016 587 PRINTS P-type cation-transporting ATPase superfamily signature 223 234 - -
Spst5g00016 587 PRINTS P-type cation-transporting ATPase superfamily signature 245 255 - -
Spst5g00016 587 PRINTS H+-transporting ATPase (proton pump) signature 299 315 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst5g00016 587 PRINTS H+-transporting ATPase (proton pump) signature 175 193 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst5g00016 587 PRINTS H+-transporting ATPase (proton pump) signature 331 356 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst5g00016 587 SFLD Haloacid Dehalogenase 5 351 - -
Spst5g00016 587 Gene3D - 311 564 - -
Spst5g00016 587 PANTHER CATION TRANSPORTING ATPASE 289 562 - -
Spst5g00016 587 FunFam Calcium-transporting ATPase 33 230 - -
Spst5g00016 587 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 562 IPR023298 -
Spst5g00016 587 Gene3D - 20 287 IPR023214 -
Spst5g00016 587 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 30 227 IPR023299 GO:0000166
Spst5g00016 587 FunFam Calcium-transporting ATPase 316 564 - -
Spst5g00016 587 Pfam haloacid dehalogenase-like hydrolase 20 313 - -
Spst5g00016 587 NCBIfam HAD-IC family P-type ATPase 221 379 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst5g00016 587 Gene3D - 3 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00016 Spst-Chr5 364370 377290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00016 1 583 Primary Pumps ATPases AT3G21180 72.520 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00016 K01537 - gmx:100817367 1031.55