Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00012 ATGCAATTAGCGTCGAATGGCGACAAGGAAGTATGTTCAGAAAGCGAACCCATCTTGAATCACCACCATCTTCATTTGCAACCACCTGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTGCTTCCAACCATGATGTCGACCATGATTTACAAAATGTTCGGGTTGATGAGACTTGTCATCTCGTAAGTGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACGCAAAAGTACGTTCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATACTTCGCGCAAATGTCCCACCAGATCGCTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACGATGGCTGTTCTGGCCATTGTTTTGGTGGGATTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTCGATCCTAGTCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 774 0.4251 MQLASNGDKEVCSESEPILNHHHLHLQPPGESSFSCEIIPIASNHDVDHDLQNVRVDETCHLVSADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00012 257 SUPERFAMILY RING/U-box 65 121 - -
Spst5g00012 257 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 190 257 - -
Spst5g00012 257 SMART ringv_2 69 118 IPR011016 GO:0008270
Spst5g00012 257 CDD RING_CH-C4HC3_MARCH 70 118 - -
Spst5g00012 257 Pfam RING-variant domain 70 117 IPR011016 GO:0008270
Spst5g00012 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 122 IPR013083 -
Spst5g00012 257 ProSiteProfiles Zinc finger RING-CH-type profile. 62 124 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00012 Spst-Chr5 343711 347632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00012 31 216 C3H Transcription Factor Family AT1G50440 67.539 4.77e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00012 - - vun:114185559 521.931