Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00005 ATGGGAGGGGATGTCCCATTCCCAGTGCCACACAAGCATGAGGGTTGTTTTGCGTTGAGTAAGTGCGTGTTATCCAGGCATCCTCATGCTCCTGCTCCGTTTGAAGTCGATAATGATAAAGCAAGAAGAAGAAGAAGATCAAATTGGCGTTGTTGTAGTGGTTCGGAGGAGTCACAGTCACAGTCACAGTCACAGTCACAGTCACAGAAACAGGGTGTTTCAAGTTCGCAACGGGAATGGGAAGTGCAGGAAGCTCGCGAGGCCGTTTCAAGTTATCTGAGAGAATTGGGAGTGCCGGAGGAGGAGTCGGTGTCCATAGCGTGGAATTCCGCGGAGTATGTGAAGATGTTGGTGGAAGGTGTGAGGGAATTGGATGAGTGGGGGTGGGAGGCAGATGAACAAACTGCGGGGTTGAGCTTCAAGGATAAGATTCTTCGTGTTGCCGCCGAAAAGGGCGACAAGGGGAAAATTGCCTACTTAGAGACTCTGGGTCTCACTCTCTCTTGGTCTATCAACGTCGCCGGATATCTCTCCACTCAAACCCTCCCCACTCTCATTCACAAGGTTACGCGCATCAAGCAACTCTTCTTTTCTCCCCCTGATAACGATCACGACCCCTCGTTGCTCATCAAATACATTCGCCTCACAATGCGCTACTTGTCCATTTCAATTGACGAAGACCTCCAACGCACCTTCTCCTTTTTCGAAAAGCTTCAAGCAAAGCCTGGTGGCCTAAACACTTTGGCTTCCCAAGATGCCGCTTTCTGTTCCTTGATACAAACCTTCCCTCGTCTCCTTCACTTATCAGTTGACAACCACTTACCCCGCATACTGGATTCGCTCCACAATTTTGGAATCCCCACATCTCGCATCTCAAACATAATACTGGCTTTCCCTCCTCTTCTCTTCTGGAATCTTCAACTCCTTCAAACTAGACTCCTCGCCTTCCAGCAGATCGACGTGGCTGATCAGGATTATGCCAAGTTGCTGCTAAAATATCCTTGGCTTCTATCGACAAGTATTCAAGAGAATTATGCGGAGCTCCTTGCTTTTTCTTATTCTATCAAGGTTTCAAAGACACAGATAGACCGTGCAATTGAAAGCCACCCTCATCTATTGAGTTGTTCAACTAGCAAGCTGGAATTGATGGTAGATCAATTTGCTAAACTAGGAGTTCGGAACAAAAAGTTAAATCAGGTTATTGCTAGAAGTCCTCAACTACTATTACGGAAGCCCAAAGACTTTCTACAGAGACGAGACAATTTTGTTGGCCCAGAGATTGTTCTGTTGTTTGAAAATATGGATTTAGATAAAGATACTATTGGAAGAATACTTGCCCGCTGCCCTGAAATTTTTGCTGCCAGCATTAATAAAACTTTACAAAGGAAGATTGAGTTCCTTGGTAGGGTTGGTGTTTCTAAGACTTTCCTTGCTGGGGTTATCAGAAAGTATCCAGAATTACTTGTTTCTGACATTGACAAAACTGTACTACAAAGGATAATGTACTTGATGAAGTTAGGGCTTTCAGGGGAAGACATTGCATATATGATACGCACTTTTTCTCCTCTTCTTGGGTACAGTATAGAGAGGGTTCTTAGGCCAAAAGTAGAATTCCTTGTGAACTCAATGGAGAGGCCAGTAACCGATGTGGTGGGTTACCCTAGGTATTTTAGCTATTCACTAGAGAAGAAGATAAAGCCAAGATATTGGGTGTTGAAAAGAAGAGATATCAAATGTAGCTTAAAGGATATGCTGGGAAAAAATGATGAAGAATTTGCTGCTGAATTTATGGGTATTGGAAGGATGCCCGTCTCTCCTCCCGTACAGAATGGGGTGTCTGTCACTGATCCCAAATCCGACCTCAAACAGCGGTAG 1875 0.4485 MGGDVPFPVPHKHEGCFALSKCVLSRHPHAPAPFEVDNDKARRRRRSNWRCCSGSEESQSQSQSQSQSQKQGVSSSQREWEVQEAREAVSSYLRELGVPEEESVSIAWNSAEYVKMLVEGVRELDEWGWEADEQTAGLSFKDKILRVAAEKGDKGKIAYLETLGLTLSWSINVAGYLSTQTLPTLIHKVTRIKQLFFSPPDNDHDPSLLIKYIRLTMRYLSISIDEDLQRTFSFFEKLQAKPGGLNTLASQDAAFCSLIQTFPRLLHLSVDNHLPRILDSLHNFGIPTSRISNIILAFPPLLFWNLQLLQTRLLAFQQIDVADQDYAKLLLKYPWLLSTSIQENYAELLAFSYSIKVSKTQIDRAIESHPHLLSCSTSKLELMVDQFAKLGVRNKKLNQVIARSPQLLLRKPKDFLQRRDNFVGPEIVLLFENMDLDKDTIGRILARCPEIFAASINKTLQRKIEFLGRVGVSKTFLAGVIRKYPELLVSDIDKTVLQRIMYLMKLGLSGEDIAYMIRTFSPLLGYSIERVLRPKVEFLVNSMERPVTDVVGYPRYFSYSLEKKIKPRYWVLKRRDIKCSLKDMLGKNDEEFAAEFMGIGRMPVSPPVQNGVSVTDPKSDLKQR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00005 624 Gene3D Transcription termination factor 3, mitochondrial 244 424 IPR038538 -
Spst5g00005 624 Gene3D Transcription termination factor 3, mitochondrial 425 600 IPR038538 -
Spst5g00005 624 SMART mt_12 210 241 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 SMART mt_12 478 509 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 SMART mt_12 442 473 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 SMART mt_12 514 546 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 SMART mt_12 547 578 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 SMART mt_12 327 358 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 SMART mt_12 256 287 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 SMART mt_12 363 393 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 FunFam Mitochondrial transcription termination factor family protein 378 600 - -
Spst5g00005 624 MobiDBLite consensus disorder prediction 52 79 - -
Spst5g00005 624 Pfam mTERF 278 593 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 PANTHER CGI-12 PROTEIN-RELATED 499 597 IPR003690 GO:0003690|GO:0006355
Spst5g00005 624 MobiDBLite consensus disorder prediction 29 79 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst5g00005 mTERF 3.3e-88 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00005 K15031 - gmx:100802127 837.795