Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00003 ATGGGGGCGCGCTCTGCTTCGGTGGTGCGCGCACCATCCATGAATGAGAAGTTGGGGTTGACCTTGGCTAAGGGTAACGCAGCTGTTTTGGTATTGGCATCGATATTAATATCATCATGCTGGTGCGCATCAGCGAAAGCGATGTATTCAGATGCGGAGGCGCTGGCGGAGTTCAAGAACTCGTTGACACATACGGTGGCCCTGAGCAGTTGGGACCCAACCATAAACCCAAAGCCACCTTGCTCTGGCAACATTTCCAACTGGGTAGGCCTGTTTTGTTTGAAGGGCAATGTTTGGGGTTTGCGCCTCGAGAACATGGGCCTAACAGGCAACATCGACGTAATGTCTCTGGCTTCAATCCCCGGTCTCCGCTCGGTTAGCTTAATGAACAACACCTTTGTGGGTCCTTTGCCTAGCGTCAGGATGTTGCCAAATCTCAAGGCCCTCTTCCTGTCCTACAATCATTTCTCAGGAACCATACCCGACGATGAATTTAAGGATTTGCGTAAATTGAAGAAACTTTATTTGTCTAACAATGAGTTCACAGGTCAAATTCCTTCCTCTATTGCCACCTTGCCTAGTCTCCTCATCCTCAGGCTCGACTCAAACAAGTTTCAAGGACAAATCCCTCAATTTCAAAACACTGATAATACTTTGAAGGTGCTCGACTTTTCTAACAATGACTTGGAGGGTCCCATTCCGGCCAAGCTAATCGCCTTCGGCACCTCCTCATTTAGCGGAAACCCAGGACTATGCGGGGCGCCCTTGACGAATGAGTGCCAGGAGGCAGCCACACCATCCAAAATGCGTCTTCTAAAAATTTTACTCGGTGTGGTCACGAGTGCATTGATAATAGTCATTCTGGTTGCATTGTTGGTCATATGTCAGTTGAGGTCGCAAACGTCCCAACTGCAACACAAACAACCTGCAGCAGGTCATCAGGCCTCAACGTTGCAGGGCCAGGGCCAAGCCTCCAACAAATGTGTTCCTCCCATTATTGTCAAAACTAAAAGCCTAGCGGATCACGACAATGGTAGTGCCGGGCAGGTGTCATCAGATCATGGTCATGGACATGCACAAGCACATTCCAGGAGGGGGGAACAAGGCAAACTGACATTCCTCAGGCATGACCAACCCAGGTTTGATTTGCAGGATTTGCTTAAGGCCTCCGCTGAAATTTTGGGAAGTGCAGGATTTGGATCCTCCTACAAGGCCGTCATTTTAGACGGTTACGCCTTGGCTGTCAAGAGGTACAAGCAAATGAACAATGTCCCGAGAGACGAGTTCCACGAGCACATGAGAAGACTAGGCAATCTTAACCATCCCAATCTCCTCCCTTTCCTCGCCTATTATTATAGAAAGGAAGAAAAGCTTCTACTCTCTGCCTTTGTTCTCAACGGTTGCTTGGCCAGTCACCTTCACGGCAATCATAACCATCAAAAGCCGGGACTTAATTGGCCAACTCGCTTGAAAATCGTGAAAGGTGTAGCTAGGGGTTTAGCTTACCTGTATAGTGCACTCCCAAGCGTGATTGTGCCTCATGGCCATCTCAAATCTTCCAACGTGCTTTTGGATGAATCCTTCGAGCCCCTGCTCACCGATTATGCCCTCAGTCCCGTCATCAACCTTGACCATGCCCAACAAATCATCATGCCTTACAAATCTCCCGAGTATGCTCAACTTGGACGCATTACAAAGAAGACTGATGTGTGGAGTTTTGGAATTCTGATACTGGAGATCTTGACCGGAAAATTCCCTGCGAACTATCTCACACTTAGGCATAATACTGATTCTGACATAGCCAGTTGGGTAAATACCATGATTACTGAGAAACGCACCAGTGACTTGTTTGACGCAGAGATGGGAGGAATCGGAAATTGTAAATCTGAATTACTCAAACTCCTGAAGATTGGCTTGAGTTGTTGTGAGGAGAACGTGGAAAGAAGGCTTGATATCAAGGAAGCTCTTCAGCTAATCGAAGACTTGAAAGAGACTGAAAATGATGCTATTATTGGAGAATACTCCTCCACTCTCATCACCGACAAAAATGCTTATAGAGCTCTGTGA 2067 0.4746 MGARSASVVRAPSMNEKLGLTLAKGNAAVLVLASILISSCWCASAKAMYSDAEALAEFKNSLTHTVALSSWDPTINPKPPCSGNISNWVGLFCLKGNVWGLRLENMGLTGNIDVMSLASIPGLRSVSLMNNTFVGPLPSVRMLPNLKALFLSYNHFSGTIPDDEFKDLRKLKKLYLSNNEFTGQIPSSIATLPSLLILRLDSNKFQGQIPQFQNTDNTLKVLDFSNNDLEGPIPAKLIAFGTSSFSGNPGLCGAPLTNECQEAATPSKMRLLKILLGVVTSALIIVILVALLVICQLRSQTSQLQHKQPAAGHQASTLQGQGQASNKCVPPIIVKTKSLADHDNGSAGQVSSDHGHGHAQAHSRRGEQGKLTFLRHDQPRFDLQDLLKASAEILGSAGFGSSYKAVILDGYALAVKRYKQMNNVPRDEFHEHMRRLGNLNHPNLLPFLAYYYRKEEKLLLSAFVLNGCLASHLHGNHNHQKPGLNWPTRLKIVKGVARGLAYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPVINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPANYLTLRHNTDSDIASWVNTMITEKRTSDLFDAEMGGIGNCKSELLKLLKIGLSCCEENVERRLDIKEALQLIEDLKETENDAIIGEYSSTLITDKNAYRAL 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00003 688 Gene3D Ribonuclease Inhibitor 147 262 IPR032675 -
Spst5g00003 688 Pfam Leucine rich repeat N-terminal domain 50 93 IPR013210 -
Spst5g00003 688 SUPERFAMILY L domain-like 40 256 - -
Spst5g00003 688 Gene3D Ribonuclease Inhibitor 44 146 IPR032675 -
Spst5g00003 688 FunFam Pollen receptor-like kinase 1 464 672 - -
Spst5g00003 688 Pfam Leucine rich repeat 144 205 IPR001611 GO:0005515
Spst5g00003 688 ProSiteProfiles Protein kinase domain profile. 388 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g00003 688 MobiDBLite consensus disorder prediction 343 366 - -
Spst5g00003 688 Gene3D Transferase(Phosphotransferase) domain 1 465 673 - -
Spst5g00003 688 Gene3D Phosphorylase Kinase; domain 1 354 463 - -
Spst5g00003 688 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 138 260 - -
Spst5g00003 688 SUPERFAMILY Protein kinase-like (PK-like) 392 663 IPR011009 -
Spst5g00003 688 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 37 666 IPR046959 -
Spst5g00003 688 Pfam Protein tyrosine and serine/threonine kinase 392 654 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00003 Spst-Chr5 227580 229911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00003 50 684 Receptor kinase-like Gene Family AT5G35390 47.005 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst5g00003 PK_Tyr_Ser-Thr 6.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00003 - - pvu:PHAVU_005G185800g 1151.73