Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00001 ATGAAATCACAGGCACAGTTTCCAGAAAAAATATCAGGGCAGGTACCTAATCAATCAGGGTCTCAGTTGCCGGGCCTGATTCAACTGAATGGAAATGCCTTGCCTCAGATACCAAAATTAGGCGTTTTTCCAACTATGGACCCTGAATTTCTTAGAGCAAGATCTTTTACGCTAGACAAAATATATAATATACTATTGCAGCGGTACCAGCATTCAGTTACAGAAGCACATAGTAGGAAGGTTAAGGATCTTGCAAAACGCCTCGAAGAGGGCATGTTAAAAACTGCTATCTCTAAGGATGACTACATGAACTTGGACACACTAGAGAGTCGCTTATCTAATTACCTTAGACTGTCATCTATGAATAATCAAAACCAGCAACATCCTCAGCTTGTTAGCTCTTCTCCAATTGGTACAATGATACCAACCCCTGGAATGTCACATATTACAAATTCAACCATGATGACAGCATCTTGTGTGGATGCCTCAATGGTTGCTGCCAGTGGATGTAACAGCATAGCATCCCCATCTGTCAATAGTGTAAACATGTTACCAGCAGGTGGCATGCTTGGCAGCTCCTTAAATAGATCTGATGGAGGAAATGTGTCATCGGTGGGCATGCAAAGAGTTACTAGCCAGATGATTCCAACTCCAGGATTTAGTGTCAGCAATAATAATTCATATACAAATATGGATCCCTCAAGTAACAGCAGTTCTTTTCCCAGAGTTGATTCTACGTTACTATTGCAGTCACAGTCCCAGCCGCAGCAGCACCAGAAGCTTCAAGACAGTGACCACAACAATTATGCATTGCACAACCTTGGCAGTAAAATGGATGGTGGAAGGAGATCTGATTTGCTGCAAAATACATTTGTATATCCAAATGGTTCTATAAATAATGAGCTAGGCTTGATTGGAAACAACATACAACTTGCAAACGAACTAGACACTGATGACTATGCTTCAGCGTATGAAAATTCCCCTAAAAGCTTACAGCAGCTCTTTGATCAAAATCAACAACCAGTAGTGCAAGGTGACAGGTATGGATTGATTAATGTTGATACATTTACTTCTGGAAGCTTTTATGCATCTGTGACATCCTCTGGTTCTATGATGAACACACAGAACATGAATGCCGTAAAATTGCCATCAATACCCATTTCCAGCTCACTTATAAGTGGTCATTCAAATTTGCACAATACGATTCATACTGCTCATCATAAGTCTCAAGCAATAAATTCATTGAAAAATTTAAAATTCCAGTCTTCCTTGACTTCAAGAGATGATCATGTAAATACTCAACATCAATATGAGCAAAGACCCCAACAATGTCACCAGTCAGAGTGGTATGGTCCACAGCAATTTCAGCTGAATCTGCAAAGTCAGCAACCTCAGCATTTGGTCAACAAGGATGCCTTCCCCCAGTCTCAGCTCTCTTCCAGTCTGGACAATCAAGTAAAGTTGGAGTCTGGTGTTGAACCGCATAAAGAAATTCTTAATTCTCAGCTTTCTGAACAGTTCCATGTATCTGAAATGCAGAACCAGTTCCAACAGTTTTCTTCTAAAGATTGCTCTAAGGTTACTCAACATCTTTCATTGGATCAGCACAACTCATCCTCATCACCACCTCAAATTTCACAAAAAATACTGCATCCTTATCAATTGGTTTCAGAGTCTCAAAATAAGTTTGACTGTCTTTCAGTGGGATCACAATCAAAATCCTTACTTAAAAATCAGTGGCTTCGATCACAAGATGAAAACCATGTTCCAAAGGGTATGTCATATGAACAGCATATTCCCATTGATTTTCATCAAAGAATATCAAGGCAAGATGAAGCTCAATGCAATAATTTACCTTTAGATGGATCTATTATTGGTCAAGCTGTTGCCTCTAGAAGCTCAGTTGAGCTGCTAGACACAAGCATTTCTATGAAAAAGGCACACAGGAATCAACAGAGATGGCTTTTATTTTTACTTCATGCTCGACGCTGTTCTGCCCCAGAAGGGCGATGCCAAGAACACCATTGTTCTATCATGAAAAAGTTATGCAATCACGTAGATGGGTGCACTATATCTCATTGTCAATATCCTCGTTGTCACCATACCAGGAAATTGCTTCGTCATTTCATAAAATGCGAGAATCCACATTGCCCTGTTTGTGTTTTAGTAAGAAAGTATCAGCGTGCATTTCAACTTAAGCCCCAAATTCTGTCAGATCCTGAGCCACGTTTGCCAATTGCTTTAAATGGATCCTGTGAAACCTTTAATGTGGTGGGCCCAACACCTAGATTGATCTCAAAGTCTCCTATACTGGTTGAAACTTCAGAAGACCTACCAGCTCGAAAGCGAATGAAAATTGAGCAGTACTCCCAGTCCATTAATACTGAATATGATAATTCTGCTTCATCTGTTCTTCCAAACTGTGAATTACAAGATTTGAAGGATACTCCGTGCCATGCCTATCCCTGTGGTGACATGCCTGTATCAACTAAATCTGAGCTGAATGAAGTAAAAGCAGAAGTTCTGGTGCATTCAATCCATGAAAATCTCAGCGAAACAAAAATGGAGGAGGATAATGCACATGATAAAAGGCCCACTGGTAGGCCTGTAACATGTAATGAGCCTGGTAATATAGCTAGGCCAGAGAATATTAAAACTGAGAGAGAAAGTGGACAAGATAAGCAAGAAAATGTGATCCAGCCACTTGAACTTGGAGCTGGAACCAAGTCTGGTAAGCCAAAAATAAAGGGGGTCTCATTGACTGAGCTGTTTACTCCTGAGCAAGTCAGGGAACATATCACTGGCCTCAGGCAATGGGTTGGCCAAAGCAAATCGAAGGCAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAACTCCTGTCAGTTGTGTGCTGTAGAGAAACTAACTTTTGAACCACCCCCTATTTATTGCACCACATGTGGTGTTCGGATTAAACGCAATAATATGTATTATACAATGGGTACTGGTGATACACGGCATTATTTTTGTATTCCATGCTACAATGAGCCTCGTGGAGACACCATTGTTGTTGATGGAACTTCTTTTCCTAAGTCAAGGTTAGAAAAGAAGAAAAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTAGAAGAAATGATGGTGGACAGGCTGAATACACTTGCCCTAACTGCTATATTCAAGAAGTGGAAAGAGGTGAGCGCAAGCCCTTACCCCAAAATGCTGTTCTTGGAGCCAAGGATTTACCCAGAACAATTCTCAGTGACCACATAGAGCAACGATTATTTAGGAGACTAAAGCATGAAAGACAAGAGAGGGCCCGATTTCAAGGGAAAAGTTACGATGAGGTGCCTGGAGCTGAATCTCTTGTTATAAGAGTTGTTTCATCTGTTGACAAGAAGTTAGAAGTTAAACAGCGGTTTTTGGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTTCCATATAAATCGAAGGTGGTTTTGTTGTTTCAGAAGATTGAAGGGGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAAAGTAAATTTCCGAATCAGCGCCGGGTTTATCTTTCATATCTGGACTCTGTTAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACTGGGGAGGCTCTTCGAACATTTGTTTATCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTTACTAGCTGCTACATTTGGGCTTGTCCTCCATTGAAGGGTGAAGATTATATCTTATATTGTCATCCGGAAATTCAGAAAACACCAAAATCTGATAAGCTTAGGGAATGGTACCTTGCTATGTTAAGAAAAGCTGCCAAAGAGAATATTGTGGTTGATCTCACCAACTTGTACGATCATTTTTTTGTATCTTCTGGTGAATGTAGGGCTAAGGTTACAGCTGCAAGGCTCCCATATTTTGATGGTGACTACTGGCCTGGAGCTGCAGAGGATTTGATTTATCAGCTTCGCCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTAAAAGCTTCTGGGCAGTCAGATCTTTCTGGAAATGCCACAAAAGATCTTCTCCTAATGCACAAACTTGGTGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCAGTCATTGTTGTATTCTAATGGTGTCTGGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATTTGTGACAAGTGTTATGAAGCAGAACTGAAACGTGAAGAGAGAGAACGGCATCCTATTAACCAGAGGGAGAAACACACCCTTTATCCTGTAGAAATTATTGATGTACCTGCCGATACGAAGGACAAAGATGAGATTCTTGAGAGTGAATTCTTTGACACTAGGCAAGCATTTCTAAGTCTCTGCCAGGGAAATCATTATCAGTATGATACTCTAAGGCGGGCCAAGCACTCCTCTATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACACCATGTAATATTTGCCGTCTTGACATAGAAACAGGTCAAGGTTGGCGTTGTGAAGTCTGCCCTGAATATGATGTGTGCAATGCTTGTTATCAAAAGGATGGTGGCACTGATCATCTTCATAAATTGACAAAACATCCGTCACTGGCAGATCGTGATGCTCAGAACAAGGAAGCTAGGCAACTTCGAGTATTACAGTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCATTGCCAATATCCAAACTGTCGCAAGGTGAAGGGGCTTTTCCGCCATGGGATGCATTGCAAAACACGTGCCTCCGGAGGTTGTGTTCTATGCAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCATGCAAGGAATCTGAATGCCATGTACCACGTTGCAGAGATTTAAAAGAACACTTGAGGCGGTTGCAACAACAGTCTGATTCACGGCGAAGAGCTGCTGTAATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCAAACAATTCTGGATGA 5133 0.4087 MKSQAQFPEKISGQVPNQSGSQLPGLIQLNGNALPQIPKLGVFPTMDPEFLRARSFTLDKIYNILLQRYQHSVTEAHSRKVKDLAKRLEEGMLKTAISKDDYMNLDTLESRLSNYLRLSSMNNQNQQHPQLVSSSPIGTMIPTPGMSHITNSTMMTASCVDASMVAASGCNSIASPSVNSVNMLPAGGMLGSSLNRSDGGNVSSVGMQRVTSQMIPTPGFSVSNNNSYTNMDPSSNSSSFPRVDSTLLLQSQSQPQQHQKLQDSDHNNYALHNLGSKMDGGRRSDLLQNTFVYPNGSINNELGLIGNNIQLANELDTDDYASAYENSPKSLQQLFDQNQQPVVQGDRYGLINVDTFTSGSFYASVTSSGSMMNTQNMNAVKLPSIPISSSLISGHSNLHNTIHTAHHKSQAINSLKNLKFQSSLTSRDDHVNTQHQYEQRPQQCHQSEWYGPQQFQLNLQSQQPQHLVNKDAFPQSQLSSSLDNQVKLESGVEPHKEILNSQLSEQFHVSEMQNQFQQFSSKDCSKVTQHLSLDQHNSSSSPPQISQKILHPYQLVSESQNKFDCLSVGSQSKSLLKNQWLRSQDENHVPKGMSYEQHIPIDFHQRISRQDEAQCNNLPLDGSIIGQAVASRSSVELLDTSISMKKAHRNQQRWLLFLLHARRCSAPEGRCQEHHCSIMKKLCNHVDGCTISHCQYPRCHHTRKLLRHFIKCENPHCPVCVLVRKYQRAFQLKPQILSDPEPRLPIALNGSCETFNVVGPTPRLISKSPILVETSEDLPARKRMKIEQYSQSINTEYDNSASSVLPNCELQDLKDTPCHAYPCGDMPVSTKSELNEVKAEVLVHSIHENLSETKMEEDNAHDKRPTGRPVTCNEPGNIARPENIKTERESGQDKQENVIQPLELGAGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTSFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQNAVLGAKDLPRTILSDHIEQRLFRRLKHERQERARFQGKSYDEVPGAESLVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSESKFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSSGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNATKDLLLMHKLGETISPMKEDFIMVHLQHACSHCCILMVSGNRWVCRQCKNFQICDKCYEAELKREERERHPINQREKHTLYPVEIIDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTPCNICRLDIETGQGWRCEVCPEYDVCNACYQKDGGTDHLHKLTKHPSLADRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNSG 1710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00001 1710 CDD PHD_HAC_like 1004 1076 - -
Spst5g00001 1710 ProSiteProfiles Zinc finger TAZ-type profile. 643 723 IPR000197 -
Spst5g00001 1710 ProSiteProfiles Zinc finger TAZ-type profile. 1592 1675 IPR000197 -
Spst5g00001 1710 MobiDBLite consensus disorder prediction 215 281 - -
Spst5g00001 1710 MobiDBLite consensus disorder prediction 215 271 - -
Spst5g00001 1710 SMART zz_5 1411 1455 IPR000433 GO:0008270
Spst5g00001 1710 SMART zz_5 1531 1577 IPR000433 GO:0008270
Spst5g00001 1710 MobiDBLite consensus disorder prediction 850 913 - -
Spst5g00001 1710 Gene3D TAZ domain 639 728 IPR035898 -
Spst5g00001 1710 ProSiteProfiles Zinc finger ZZ-type profile. 1532 1585 IPR000433 GO:0008270
Spst5g00001 1710 Pfam Histone acetylation protein 1134 1355 IPR013178 GO:0004402|GO:0006355|GO:0016573
Spst5g00001 1710 SUPERFAMILY TAZ domain 648 728 IPR035898 -
Spst5g00001 1710 Pfam TAZ zinc finger 652 720 IPR000197 -
Spst5g00001 1710 Pfam TAZ zinc finger 1602 1672 IPR000197 -
Spst5g00001 1710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1029 1077 IPR013083 -
Spst5g00001 1710 SUPERFAMILY RING/U-box 1513 1580 - -
Spst5g00001 1710 Gene3D - 1408 1467 IPR043145 -
Spst5g00001 1710 Gene3D TAZ domain 1589 1706 IPR035898 -
Spst5g00001 1710 MobiDBLite consensus disorder prediction 1 24 - -
Spst5g00001 1710 ProSitePatterns Zinc finger PHD-type signature. 1005 1076 IPR019786 -
Spst5g00001 1710 SUPERFAMILY FYVE/PHD zinc finger 1038 1078 IPR011011 -
Spst5g00001 1710 Pfam PHD-finger 1035 1077 IPR019787 -
Spst5g00001 1710 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1094 1530 IPR031162 GO:0004402
Spst5g00001 1710 FunFam Histone acetyltransferase HAC1-like protein 1589 1706 - -
Spst5g00001 1710 MobiDBLite consensus disorder prediction 850 868 - -
Spst5g00001 1710 PANTHER CBP/P300-RELATED 80 1701 IPR013178 GO:0004402|GO:0006355|GO:0016573
Spst5g00001 1710 Gene3D - 1531 1583 IPR043145 -
Spst5g00001 1710 MobiDBLite consensus disorder prediction 425 445 - -
Spst5g00001 1710 ProSitePatterns Zinc finger ZZ-type signature. 1537 1564 IPR000433 GO:0008270
Spst5g00001 1710 Pfam Zinc finger, ZZ type 1535 1572 IPR000433 GO:0008270
Spst5g00001 1710 SMART TAZ_2 645 723 IPR000197 -
Spst5g00001 1710 SMART TAZ_2 1595 1673 IPR000197 -
Spst5g00001 1710 ProSiteProfiles Zinc finger ZZ-type profile. 1412 1475 IPR000433 GO:0008270
Spst5g00001 1710 FunFam Histone acetyltransferase of the CBP family 12 1408 1467 - -
Spst5g00001 1710 SUPERFAMILY RING/U-box 1392 1464 - -
Spst5g00001 1710 SMART KAT11_2 1127 1424 IPR013178 GO:0004402|GO:0006355|GO:0016573
Spst5g00001 1710 SUPERFAMILY TAZ domain 1594 1677 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00001 Spst-Chr5 166776 177701 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Spst5g00001 HAT_KAT11 1.7e-31 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00001 K04498 - gmx:100800511 2932.12