Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03523 ATGAACGATCTAATGACCAAGTCCTTCACCAGCTACGTAGATTTAAAGAAAGCTGCGATGAAAGACGTTGATTTGGAAGCGGGTATCGCTGTTCCTCCCAATGTGGAACTAACCTCCTCCATAACCCACTTGGACACTGACATGGGTCTCTTCTTGGAAGAGGCTGAGAAGGTGAAGACTGAAATGGGGTCACTCAGAGACATCCTGGGCAGCCTGCAACAGGCCAACGAGGAGAGCAAGTCCCTACACAAGGCTGAGGCGCTCAAGGCGCTCCGGAGCCGGATTAACGCCGACATTGTCGCCGTGCTGAAGAAGGCCAGGGCGATCAGGGCCCAGCTGGAGGAGATGGACCGCGCCAACGCCGCCAACCGGAGGCTCTCCGGTCTGAAGGATGGGACTCCGGCCATCTACCGGACCCGAATCGCTGTTACCAATGGACTGAGGAAGAAGCTGAAGGAGCTGATGATGGAGTTTCAGGGGTTGAGGCAGAGGATGATGAGCGAGTACAAAGATACTGTGGGGAGAAGGTACTTTACAGTGACTGGGGAGTACCCAGATGAAGAGGTGATTGAGAAGATCATAGCCAATGGTAATGAGGAAGAGGTTTTGGGGAAGGCCATTCAGGAACATGGGAGAGGAAAGGTTCTGGAAACTGTGGTGGAGATTCAGGACAGGCATGATGCTGCTAAGGAAGTGGAGAAGAGTTTGCTGGAGCTGCACCAGGTGTTTCTGGACATGGCCGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCACGTGTTGCACGCTTCGCACTATGTTAAGGATGGGACCAAGAATCTACAGAGTGCGAAGGAGTACCAGAAGAGTAGCAGGAAGTGGATGTGTATTGGGATCATACTGCTGCTTATTCTTATTCTGGGTGAATTTGTAAGTGTGTGA 933 0.5188 MNDLMTKSFTSYVDLKKAAMKDVDLEAGIAVPPNVELTSSITHLDTDMGLFLEEAEKVKTEMGSLRDILGSLQQANEESKSLHKAEALKALRSRINADIVAVLKKARAIRAQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEYPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQSAKEYQKSSRKWMCIGIILLLILILGEFVSV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03523 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 219 281 IPR000727 -
Spst4g03523 310 FunFam Syntaxin 132 212 310 - -
Spst4g03523 310 Gene3D - 44 173 - -
Spst4g03523 310 PANTHER SYNTAXIN 65 300 IPR045242 -
Spst4g03523 310 SMART tSNARE_6 214 281 IPR000727 -
Spst4g03523 310 CDD SNARE_syntaxin1-like 218 279 - -
Spst4g03523 310 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 45 176 - -
Spst4g03523 310 SMART SynN_4 43 170 IPR006011 GO:0016020
Spst4g03523 310 Coils Coil 144 164 - -
Spst4g03523 310 ProSitePatterns Syntaxin / epimorphin family signature. 225 265 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst4g03523 310 SUPERFAMILY t-snare proteins 46 274 IPR010989 GO:0016020|GO:0016192
Spst4g03523 310 CDD SynN 48 206 IPR006011 GO:0016020
Spst4g03523 310 Pfam Syntaxin 51 254 IPR006011 GO:0016020
Spst4g03523 310 Gene3D - 215 309 - -
Spst4g03523 310 Pfam SNARE domain 256 304 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03523 Spst-Chr4 76253319 76255522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03523 1 293 SNARE and Associated Proteins AT1G08560 64.983 1.73e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03523 K08486 - gmx:100816016 547.354