Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03518 GAGAAGAATGCGGTTATGGGAACCCCACAATCCAACAACTTACCACCAGGGTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTAAGGAAGAAGGTGGCCTCTATTCCTTTGCCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTGTGATCCATGGGAGCTACCAGCTAAGGCTGCGTTTGGGGAGAAAGAGTGGTACTTCTTCAGTCCAAGAGACCGGAAGTACCCAAACGGAGCGAGGCCAAACAGGGCAGCTGCCTCAGGGTATTGGAAGGCCACAGGCACTGATAAGAACATAGTTGCATCATTAATGGCAGGAGGAGTGAGAGAACATTTTGGTGTGAAGAAGGCTTTGGTGTTTTACAAAGGAAGACCCCCAAAGGGTGTGAAGACCAATTGGATCATGCATGAATATCGCCTTGTTCACACCAATAAACCCATTAGGATGAAGGACACTTCCATGAGGTTGGATGAGTGGGTTCTGTGCCGGATATACAAGAAGTCCAAACACAGTACTGTATGTTCAATAACAGAGGCATCACCAACAGTGCAACTGAATGAGCAAGGTGGAGCAGAAGAGGAGAAAATCAAAGACACCCTTTCACCAATGTTTCTCCCTCCTCCACAGGCCACATTCGTTTCTCAAAAATCTCTATCCTTCTCCAACCTTTTGGATGCCACAGACTTCTCCATGCTCAGCACCATCTTATCAGAGAACCACTACTCCACTTATCCAAACACAAGTGAACCCTTGTTCAATTCTGAGAATCTGGATCATGAAACTCCCCAAAACTACTCCAACAGCAATGATATTAATAATAGGAGCTACTTGTTTCAGAAGAACTCTTCAGTGATTCCCCACAAACGCCACCTTTCAAACATGGATGAGGACATGATTTACCCTTCAAACAAACACCATAGTTCCTCTTGCAATTTTCCAAACACCACCCTCCAAAATCAAAACCCCCCATGGAACTTCATGTTCAAGCAGCCTCTCATGAATCGGCAGTTACTTCCGGGTCCTCAATATCTTCAATTTCACTGA 1059 0.4523 EKNAVMGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLMAGGVREHFGVKKALVFYKGRPPKGVKTNWIMHEYRLVHTNKPIRMKDTSMRLDEWVLCRIYKKSKHSTVCSITEASPTVQLNEQGGAEEEKIKDTLSPMFLPPPQATFVSQKSLSFSNLLDATDFSMLSTILSENHYSTYPNTSEPLFNSENLDHETPQNYSNSNDINNRSYLFQKNSSVIPHKRHLSNMDEDMIYPSNKHHSSSCNFPNTTLQNQNPPWNFMFKQPLMNRQLLPGPQYLQFH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03518 352 SUPERFAMILY NAC domain 10 172 IPR036093 GO:0003677|GO:0006355
Spst4g03518 352 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Spst4g03518 352 Pfam No apical meristem (NAM) protein 15 145 IPR003441 GO:0003677|GO:0006355
Spst4g03518 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 271 - -
Spst4g03518 352 FunFam NAC transcription factor 56 23 177 - -
Spst4g03518 352 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03518 Spst-Chr4 76191336 76194595 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03518 12 352 NAC Transcription Factor Family AT3G04070 50.559 4.26e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g03518 NAM 4.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03518 - - gmx:100817074 531.946