Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03516 ACAACTTTGTTTTCTTCTGGGGAAGCTTTCAAGAGCAAGCCTCCTGAGAGACGGTGGAGATGGAAACAGGTAATGAAAAATCTCCAGCTTAATTTGATGATGGAAGAACCTGTTGTGGTTAACAAAGGGGATGAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGACGAAGAGATCATCACTTGTTACCTCACGGAGAAAGTGCTGAATAGAGGCTTCAGTGCAACTGCTATTGGGGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCCAAAAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTCTGCCAAAGGGATAGGAAGTATCCAACTGGCATGAGAACCAATAGAGCAACACAATCTGGATATTGGAAGGCCACTGGCAAGGACAAAGAGATTTACAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTCTTCTATAGAGGAAGAGCTCCAAAGGGAGAGAAGACAAATTGGGTTATGCATGAATTCAGACTGGAATGCAAATTCGCATGTTACAACCTTCCTAAGGTTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGAGCAACACCGATGTTAACAAAAGGGTACACCCAATTAACCCTGGCCTTCTGAGAATGAACTCAATTGGAGAAGATCTATTTGATTTCTCTTCACTTCCACCTCTGGTGGATCCTCTCTTTGACCAAATATCACACAAGCACATTGACAATGATTTCAAGGGTACTAGTAATAGTATTAACACACCTTCATCATCATCGGCTAAACAACCCCCAGGTGGCTACTACCTTCCCAATTTCATGAACAACATCAGCAACAATCACCACATGCAGATGATGATGATTAAGCCAGAAGAACATAGAATCTATGACACTCCTCCCACCAACATTAACGATGCCTCCACCAGTCAAGGGAATTTCAACTCTAACAGCCCAACGGGAATTAGCACAAGCAATAACACCCTTCAAAACTCAACCTCACCCTTCAACATGTTCCAAGATTATTATATGCACCAAGGCAAGAACAGTTTCCAACAGTGCAAGATGGAGCAATTCTCCAACACTAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTGAGCAATGACAGAAACACTGACACTTCCTCGGTGGTGTCAAAGCAAGACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGATCAAGCTCCTTCATCAGTTGCTACCCTCTCAGATTTGGATTCCCTCTGGGATGATTACTGA 1287 0.4429 TTLFSSGEAFKSKPPERRWRWKQVMKNLQLNLMMEEPVVVNKGDEPLDLPPGFRFHPTDEEIITCYLTEKVLNRGFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLECKFACYNLPKVAKDEWVVCKVFHKSNTDVNKRVHPINPGLLRMNSIGEDLFDFSSLPPLVDPLFDQISHKHIDNDFKGTSNSINTPSSSSAKQPPGGYYLPNFMNNISNNHHMQMMMIKPEEHRIYDTPPTNINDASTSQGNFNSNSPTGISTSNNTLQNSTSPFNMFQDYYMHQGKNSFQQCKMEQFSNTNQPVVSASQDTCLSNDRNTDTSSVVSKQDNMGRNKALYEDLDQAPSSVATLSDLDSLWDDY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03516 428 MobiDBLite consensus disorder prediction 253 271 - -
Spst4g03516 428 SUPERFAMILY NAC domain 46 200 IPR036093 GO:0003677|GO:0006355
Spst4g03516 428 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 350 - -
Spst4g03516 428 Pfam No apical meristem (NAM) protein 50 175 IPR003441 GO:0003677|GO:0006355
Spst4g03516 428 Gene3D NAC domain 58 205 IPR036093 GO:0003677|GO:0006355
Spst4g03516 428 ProSiteProfiles NAC domain profile. 49 200 IPR003441 GO:0003677|GO:0006355
Spst4g03516 428 MobiDBLite consensus disorder prediction 251 271 - -
Spst4g03516 428 FunFam NAC domain-containing protein 100-like 58 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03516 Spst-Chr4 76162213 76165313 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03516 30 240 NAC Transcription Factor Family AT5G18270 72.685 6.44e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g03516 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03516 - - gmx:100813376 607.06