Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03512 ATGGAGAATGATATGGAAGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAATCCAATTAGTGAGGCTGAGAACGTATGCCCATTTTGTGAGACTGAATTTTCTGAGGTAATGGACAATATAAGGGACCAGAATGATGTTATCGACTTGAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCAATTTTTCTTGGTTTGATGGGTGCTTTCAGTCCTTCTCTAGCAAGAATTGCTCCACACGGAGGTAGCAGCTCGAGAGGGGAGGAAGAAGAGGTTGAGCAACATATGGAAAATGAGCTTGTGCTTGGAAGAAGGAGAAGAACTTCATCATACATGATGCATCTTTTTCGTGGACTTCATGTTAGGATGGTGTCTGAATTTGAAAACCTTGAAGACAATAGAAACATGGATAATAGCAGCATACTTGTTATTGATCCATTCAATGAAGGTGCATTGATTGTGAGAGGCCCTAACCTGAATCACACAAGTATTCCAAATGAGAATAATATTGTTGGTAGCTCCCTAAATGACCTTGTGGTAGGTTCTGGCTTTGATTTGTTACTGCAACACTTGACACAAATTGGTCCTGGTGGGTATGCAAGCGTGAACCCTCCAGCACAGACAGAAGCCATTGAAGCATTGCCTAGTGTGACAAGTGTGGAGAAGTTGCAGTGCACAGTGTGTTTGGAGGATGTTGACATTGGGAGTGAAGCAAAGGAGATGCCATGTAAGCATAAGTTCCATGATGACTGCATTGTCTCATGGCTAAAACTTCATGGTTCTTGTCCAGTTTGCAGGTTTCAAATTCCATCTGAGGATCCAAATGTTGAAGCCAATGTGGGCATTGGAAATGGGGACAATCAAAACAATGAGCTGGTTAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAATTGGTTTCCAGTGCTACAATCATTTAACAATTTTCTTCCTGCTCCTTGA 969 0.4252 MENDMEGVHWCNICSKMVNPISEAENVCPFCETEFSEVMDNIRDQNDVIDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSSSRGEEEEVEQHMENELVLGRRRRTSSYMMHLFRGLHVRMVSEFENLEDNRNMDNSSILVIDPFNEGALIVRGPNLNHTSIPNENNIVGSSLNDLVVGSGFDLLLQHLTQIGPGGYASVNPPAQTEAIEALPSVTSVEKLQCTVCLEDVDIGSEAKEMPCKHKFHDDCIVSWLKLHGSCPVCRFQIPSEDPNVEANVGIGNGDNQNNELVRAGEERPRNGRRNWFPVLQSFNNFLPAP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03512 322 SUPERFAMILY RING/U-box 217 273 - -
Spst4g03512 322 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Spst4g03512 322 SMART ring_2 226 266 IPR001841 -
Spst4g03512 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 273 IPR013083 -
Spst4g03512 322 FunFam E3 ubiquitin-protein ligase RNF181 198 273 - -
Spst4g03512 322 Pfam Ring finger domain 225 267 IPR001841 -
Spst4g03512 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 129 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03512 Spst-Chr4 76061802 76062770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03512 90 293 C3H Transcription Factor Family AT1G26800 29.268 2.51e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03512 - K11982 gmx:100790855 583.178