Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03489 ATGCTTCCGACTAAAACTTTAACTCACACTTTGGGCGTTCCCTGGTTGGAACCCCAACAAAGCGACGTCGTAACGGGGACTGGCGTTCTCTTACCTTCTTTCCAAACAATGGTGGATGGTGACTGGTACTTGGATCATTCTCACCACGAGTTTCTCCTAAACGACGCGTTTTTATTAAACCCTTTGGACTCTTCTTCTTCGTTGCCGGAGCAACACCTTGTGGTGCCGCAGAAGCCGAGTTTCTCCTCCTTCTTCGACGCCAACGGGAACGGTTTTCTCGACAGTGGGTTTGAATGCGGTGCTCAGAGTTGTTTCCTCGCGGGGTTATCGGCGAATGCGCCCAGTTTGAACGCGGCGTTTCCGGCAAGTCCACTTGGTGGCGGGGTGCCTCGGGATGAGAAGCATGACAGGACCGCGCTGCGGTCTCTTTACAAGCTTTCTCCGCCTACTCGGTATCGGAAGCGGATGGAGCGGTGGCGGGAGGCAGGGAATTTGGAGGAATCGGAGCTTCCGCCGCCTCCCGGGAGGAGGAAGAGAGAGAATGAGGAAGGTTTGAGTTATGAGTCTGATGAGGATGGGAAGTTGTTGGAGAATGGCTTTGATGCAAATGATAACGATGATGATCATGAAAATCAGAATGGTGGTGTTGGTGTTGGTGGTGGTGGTGAAGATCAGAAAGGAAAGAAGAAGGGGATGCCGGCGAAGAATCTCATGGCTGAGAGGAGGCGGAGGAAGAAATTGAATGATAGGTTGTACATGCTTAGGTCTATTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATTCTTGGGGATGCCATTGACTACCTGAGGGAGTTACTACAGCGGATTAATGATCTTCATAATGAACTAGACTCAAGCACGCGTGGCTCATCTCTTCCACCTGCTGCCAGCTTTCACCCTGTGACAGCCACTGTGAAGGAAGAACTATGTGCTACCACTCTGCTAAGTCCTAAAGACCAATCAGCAAAGGTGGAGGTTAGGCTAAGGGAAGGGAGAGCTGTCGATATCCATATGTTTTGTGCCCGCAGACCAGGTCTTTTATTTTCTATCATGAGGACATTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGCTGTTTCGATGGTTTTGCTTTAGATGTGTTCAGAGCTGAGCTATACCGGGAAGGCCAGGATGCTGCCCCAGAACAAATTAAAGCGGTACTGTTGGAGACAACAGGTTTCTGTGATTAG 1242 0.5 MLPTKTLTHTLGVPWLEPQQSDVVTGTGVLLPSFQTMVDGDWYLDHSHHEFLLNDAFLLNPLDSSSSLPEQHLVVPQKPSFSSFFDANGNGFLDSGFECGAQSCFLAGLSANAPSLNAAFPASPLGGGVPRDEKHDRTALRSLYKLSPPTRYRKRMERWREAGNLEESELPPPPGRRKRENEEGLSYESDEDGKLLENGFDANDNDDDHENQNGGVGVGGGGEDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSIVPKISKMDRASILGDAIDYLRELLQRINDLHNELDSSTRGSSLPPAASFHPVTATVKEELCATTLLSPKDQSAKVEVRLREGRAVDIHMFCARRPGLLFSIMRTLDNLGLDVQQAVISCFDGFALDVFRAELYREGQDAAPEQIKAVLLETTGFCD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03489 413 SUPERFAMILY ACT-like 342 405 IPR045865 -
Spst4g03489 413 CDD ACT_UUR-ACR-like 344 404 - -
Spst4g03489 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Spst4g03489 413 MobiDBLite consensus disorder prediction 163 234 - -
Spst4g03489 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 298 IPR036638 GO:0046983
Spst4g03489 413 SMART finulus 237 286 IPR011598 GO:0046983
Spst4g03489 413 Pfam Helix-loop-helix DNA-binding domain 238 280 IPR011598 GO:0046983
Spst4g03489 413 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 126 411 - -
Spst4g03489 413 Gene3D - 223 296 IPR036638 GO:0046983
Spst4g03489 413 ProSiteProfiles ACT domain profile. 343 413 IPR002912 -
Spst4g03489 413 MobiDBLite consensus disorder prediction 124 145 - -
Spst4g03489 413 Coils Coil 277 297 - -
Spst4g03489 413 CDD bHLH_AtAMS_like 234 305 - -
Spst4g03489 413 MobiDBLite consensus disorder prediction 163 211 - -
Spst4g03489 413 FunFam BHLH transcription factor 227 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03489 Spst-Chr4 75713409 75719174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03489 232 394 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 76.471 3.91e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g03489 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03489 - - gsj:114390091 476.478