Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03487 ATGAGTACCAACCAAAACACCACCTTCTTCCCCACTCCACATGGCCAAATAACCACTTCTAAATTTATTAATACCCAGGATCCATCTCAAGCCACAAATCAAGGCAATAATGATATTAGGAAAAAGCACTATAGAGGAGTTAGGCAAAGACCTTGGGGGAAATGGGCAGCTGAAATAAGAGACCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCTTTGGCTTATGATGCTGCGGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCGGAACGCGTTGCTGTGCCACTACCACCAACAAACACCACTTCTTCGGCTTCTGCACAACCATCTTCTCTCACACCTCCACCACATGTTGGCGGTGATCATCAAACTCTACAACAAAGTAGTGGCAATAGTTCTCTTTTAGTGTCACCACCAACATCAGAAGAAGCAGAAGGGTTTCCAAGTCTGATGGAGTATGCACGGTTGCTGAAATGTAGGGATGATGATGATTTCCAACGTGTCGCATTGGGGCTTTACCAGCACCATCACAATGAGGATCTTGTCTATGGTTCATCCCAGCCACCACCTGTGCCTTTTTTTGTGTCTTCTTCATCGTCTTCTGCGTTGGCATCATCAACTTCTGAGGGTGATGTTGGAGGCTATGGTTCTTATGGATTTTTTGGTCAAGGAGGAAGTGGTTTTGATGAAGGGAACACGAGGGGGTCATAG 744 0.4583 MSTNQNTTFFPTPHGQITTSKFINTQDPSQATNQGNNDIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDAAALKFKGNKAKLNFPERVAVPLPPTNTTSSASAQPSSLTPPPHVGGDHQTLQQSSGNSSLLVSPPTSEEAEGFPSLMEYARLLKCRDDDDFQRVALGLYQHHHNEDLVYGSSQPPPVPFFVSSSSSSALASSTSEGDVGGYGSYGFFGQGGSGFDEGNTRGS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03487 247 MobiDBLite consensus disorder prediction 1 37 - -
Spst4g03487 247 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Spst4g03487 247 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Spst4g03487 247 MobiDBLite consensus disorder prediction 106 155 - -
Spst4g03487 247 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Spst4g03487 247 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Spst4g03487 247 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Spst4g03487 247 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Spst4g03487 247 MobiDBLite consensus disorder prediction 107 124 - -
Spst4g03487 247 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Spst4g03487 247 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Spst4g03487 247 MobiDBLite consensus disorder prediction 131 150 - -
Spst4g03487 247 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Spst4g03487 247 PANTHER DNA-BINDING DOMAIN 30 143 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03487 Spst-Chr4 75678777 75680319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03487 24 125 AP2-EREBP Transcription Factor Family AT5G61890 67.619 1.00e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g03487 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03487 - - gmx:100806383 303.908