Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03480 ATGACTGATTCTGACGCCAATCACAATGACGTATCTCTGGCTACCGTCGCTGATGCACCCGATGATGCTGAAGAAGATGTGAAGTTGAGGTCTAGGGACCAAAGACTGGCTCTGCAAGGTGAGCCCAAGTGTGTGATATGTGGTCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAAGCAGTGCTTTGCAGAATTGGCAAATCATTGGCTCCTATTGGTAGCATTCTTCCACCTAAAAAGATTCCTATAGCTGATGAATGCTTTTATGTTAGTGATGCTGATTACAAATCAGGGACTGCATCTATAGCTAGTGATCTTAGAACGAAACTTGACATTCATGTGAAGGGCGATGTCGTGGCACCAATCTTGTCATTCTCTGCCTGTAACCTCCCTGACAAGCTCCTCCACAATATAGAAGCAGCTGGGTATGACATGCCTACACCTGTTCAGATGCAAGCAATCCCTGCTGCTTTGACGGGCAAAAGCATGCTTGTTTTGGCCGGTACAGGATCTGGGAAGTCTGCTTCATTTCTTATTCCGATAGTTTCTCGTTGTGTGAGTCATCGCCGACTATATGTTTCAGATAAGAAGAAGCCTTTAGTTATGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAGATGCTTGGCAAGGGATTGCCTTTCAAAACTTCTCTTGTGGTTGGTGGTGAGGCCATGGCTGGACAACTCCATCGCATTCAACAAGGTGTGGAATTGATTGTAGGAACCCCAGGAAGGCTTCTTGATCTTCTAATGAAGCATGAGATTGACTTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTTGATGCTGCAAAGGGGCTTTAGAGATCAGGTCCTGCAGATATATAGGGCTCTGTCACAACCTCAGGTCATGATGTATTCTGCGACAATGTCTAATGATTTAGAGAAGATGATTAACTCTCTGGCAAATGGTACAGTGGTTATATCCGTTGGAGAACCTAACAGACCAAATAAGGCTGTGAAGCAGCTTGCAATTTGGGTGGAGTCAAAGCAAAAGAAGCAGAAATTGTTTGACATTTTGGCAAGTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTGGGCTCCAGACTTGGGGCAGATCTTCTGGCTAATGCAATTACAGTTGCCACCGGGATTAAAGCAGTTTCAATTCATGGGGATAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTTATGGGTGAGGTCCCAGTAATTGTGGCTACTGGAGTTTTAGGTAGGGGGGTTGATCTGCTGGGTGTAAGACAGGTGATTGTCTTCGACATGCCTAATTCCATTGAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAAGAAGGTGAAGGTATAGTTTTTGTTAATGAGGAGAATAAGAATGTCTTTGCAGACTTACTTGATGTACTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCTAATTCACGGTATGCCACAGGATTTTTCTCTGGTGGGAAGGGTTCAAAGAAGAGAAAGTATACACTATGA 1602 0.4395 MTDSDANHNDVSLATVADAPDDAEEDVKLRSRDQRLALQGEPKCVICGRYGEYICDETDDDVCSLECKQAVLCRIGKSLAPIGSILPPKKIPIADECFYVSDADYKSGTASIASDLRTKLDIHVKGDVVAPILSFSACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKSMLVLAGTGSGKSASFLIPIVSRCVSHRRLYVSDKKKPLVMVLTPTRELCIQVEEHAKMLGKGLPFKTSLVVGGEAMAGQLHRIQQGVELIVGTPGRLLDLLMKHEIDLDDVMTFVVDEVDLMLQRGFRDQVLQIYRALSQPQVMMYSATMSNDLEKMINSLANGTVVISVGEPNRPNKAVKQLAIWVESKQKKQKLFDILASKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGDKSMKERREIMQSFFMGEVPVIVATGVLGRGVDLLGVRQVIVFDMPNSIEEYVHQIGRASRMGEEGEGIVFVNEENKNVFADLLDVLKSGGAAVPRELANSRYATGFFSGGKGSKKRKYTL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03480 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 342 IPR027417 -
Spst4g03480 533 Gene3D - 23 79 - -
Spst4g03480 533 Pfam HIT zinc finger 42 68 IPR007529 -
Spst4g03480 533 CDD SF2_C_DEAD 352 484 - -
Spst4g03480 533 Pfam DEAD/DEAH box helicase 157 328 IPR011545 GO:0003676|GO:0005524
Spst4g03480 533 Gene3D - 346 530 IPR027417 -
Spst4g03480 533 Gene3D - 101 344 IPR027417 -
Spst4g03480 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 514 IPR001650 -
Spst4g03480 533 SMART ultradead3 152 355 IPR014001 -
Spst4g03480 533 FunFam DEAD-box ATP-dependent RNA helicase 41 24 81 - -
Spst4g03480 533 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Spst4g03480 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 489 IPR027417 -
Spst4g03480 533 Pfam Helicase conserved C-terminal domain 365 475 IPR001650 -
Spst4g03480 533 SMART helicmild6 393 475 IPR001650 -
Spst4g03480 533 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 131 502 - -
Spst4g03480 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 340 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03480 Spst-Chr4 75586217 75588141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03480 134 495 Eukaryotic Initiation Factors Gene Family AT1G72730 32.970 6.58e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03480 K19466 - gmx:100784491 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03480 4 75586217 75588141 Spst4g03480 4 75586217 75588141 ECH