Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03477 ATGGCGACGAGGTACTGGGTAGTGTCTCTCCCCGTTCCGAATTCCGCATCCACTCTGTGGAACAAATTGCAGGAGCAAATCTCCAAACACTCTTTCGACACTCCTCTTTACAGATTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCTCTTCTCTCTCTAAGCGACGATCTTGTCAAGTCGAACAATTTCGTGGAGGGAGTATCGCACAAGATCAGGCGGCAGATTGAGGATCTGGAGAGAGTATCCGGCGTGGTGAGCAGTAGTTTGACGGTGGATGGAGTCCCTGTTGATTCGTACCTGACGAGGTTTGTTTGGGATGAAGCCAGGTACCCGACTATGTCGCCGTTGAAGGAGATTGTGGATGGCATTCACGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGAGAGTTGTTGCTATCATGCCAAGTGGAGTATTTGAGTTATTGGTATCAGTTTTCCGTCTGGATGGTCAAGTGACAGAGGCTGTTTGTGCTTGCTGGTGCTTAGGGAGGGCCACCAAGGAAAGTGCCAAATGGCAGTGGTGCCTTATTGTGTTTGGTGGTGCTGGATGCGTTTTGACATTAACATTTGACTTCTTTGGACTAGGAACATTTGTCCTCTCCTATGGAACCTCAATTCTTCATCTTCTTCAACTTGACTACCATATCTTGAAGGTTCGTGTGTCTGAGTATAACAATATCCGCAGTCAGCTTAATACCATCAACCGAAAACAAACTGGAAGCTTAGCTGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTGGCTACCCTTCTTGCAATTGTTCCTAAGTATTCACAGAAGGATTGGCTCTCAAGCTACGAAACATTGACAAACTATGTGGTTCCCAGGTCCTCCAAGAAGTTGTACGAGGATAATGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAAAACTAGTGCACGAGAAAAAGGGTTCCAAATTCGTGATTTCGAATATAGTCCCGAAACACATGAGAGTCGGAAGCAAGAGTTAGAGAAATTGATGGAAGATCAGGAGAGTTTGAGGGGCTCTCTATTGCAGTGGTGTTATACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTCTGTGCAGTACGTGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAAGCTGAGAAGAAATTGCGCTCTATCCTTGAAGGGTTCAGCGATAGCACAAACAGTGGTTACTGGAAGTCCGAGGATGAAGGGGTTGGGATGGCTGGACTAGTAGTAGGTGATGCCGATGCCCACCCTTATGTCTCGTTCACTATCAATCTTGTTTGA 1401 0.4547 MATRYWVVSLPVPNSASTLWNKLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNNFVEGVSHKIRRQIEDLERVSGVVSSSLTVDGVPVDSYLTRFVWDEARYPTMSPLKEIVDGIHGQVAKIEDDLKRVVAIMPSGVFELLVSVFRLDGQVTEAVCACWCLGRATKESAKWQWCLIVFGGAGCVLTLTFDFFGLGTFVLSYGTSILHLLQLDYHILKVRVSEYNNIRSQLNTINRKQTGSLAVRDLSNLVKPEDIITSENLATLLAIVPKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIRDFEYSPETHESRKQELEKLMEDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKAEKKLRSILEGFSDSTNSGYWKSEDEGVGMAGLVVGDADAHPYVSFTINLV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03477 466 Gene3D - 41 146 - -
Spst4g03477 466 Pfam V-ATPase subunit C 5 139 IPR004907 GO:0033180|GO:0046961|GO:1902600
Spst4g03477 466 Pfam V-ATPase subunit C 225 459 IPR004907 GO:0033180|GO:0046961|GO:1902600
Spst4g03477 466 CDD V-ATPase_C 5 463 IPR004907 GO:0033180|GO:0046961|GO:1902600
Spst4g03477 466 FunFam V-type proton ATPase subunit C 253 341 - -
Spst4g03477 466 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 226 465 IPR004907 GO:0033180|GO:0046961|GO:1902600
Spst4g03477 466 SUPERFAMILY Vacuolar ATP synthase subunit C 1 140 IPR036132 GO:0015078|GO:0033180|GO:1902600
Spst4g03477 466 SUPERFAMILY Vacuolar ATP synthase subunit C 226 465 IPR036132 GO:0015078|GO:0033180|GO:1902600
Spst4g03477 466 Gene3D - 230 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03477 Spst-Chr4 75541413 75550582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03477 226 465 Primary Pumps ATPases(2) AT1G12840 79.583 1.58e-140 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03477 K02148 - gmx:100790694 478.404