Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03469 ATGAATTCCCTCAAGCCATCGCCATCGTCATCATCCTCCAAGTCCAAAAAGAAGCAAACCACAACACAAGATCATCAACAACATGAAACGGTTTGGGGAGGGAGGTACCTTGGTGTGAGAAGGCGACCATGGGGAAGGTACGCGGCGGAAATTCGCGACCCTTCCACCAAGGAGAGGCATTGGTTGGGCACATTTGACACCGCCGAAGAAGCTGCCCTCGCATACGACAGAGCGGCTCGTTCCATGCGCGGGTCACGTGCCCGAACCAATTTTGTCTATCCAGACACTCCGCCAGGCTCCTCTGTGACCTCCATCATCTCTCCTGATGAACAAACCCAAATCCAAATCCATCAGGCCCAAGAAGACCTCTCCTCTCTACTAAATCAGAACATGTGTTCACAACCCGACCCGAACTCACAATTTTCTTTGGGCGGGTACCCGGGTGTAGCCAACACTCCCACATTTTCTACCACCGATGTTGCCTCATCCGGTGGCTATAGCTATAGTTATGGTTACACCGAAGGAGCAACCAACGTGGAGGGTTCACATTCACATTTTAATCTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATGAGCTATGAAACGGGTCATGGGCTTTATGGAGATGGTGTGGGGTTTTCCGATCCAAGTTATAGTGTGTCGAGTACCGGGTCGGGTTACCCGTATTTGGGATATGAATCGAGTGATTACGTGGTGCATAGTCCACTCTTTAGTGCAATGCCACCAGTCTCGGATAACGTGGCAACGGGTCATGAGGGTTTTGATTTGGGAAGCTCTTCTTATTTCTTCTGA 840 0.5048 MNSLKPSPSSSSSKSKKKQTTTQDHQQHETVWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGSSVTSIISPDEQTQIQIHQAQEDLSSLLNQNMCSQPDPNSQFSLGGYPGVANTPTFSTTDVASSGGYSYSYGYTEGATNVEGSHSHFNLFDDGETQLPPLPPDITSSMSYETGHGLYGDGVGFSDPSYSVSSTGSGYPYLGYESSDYVVHSPLFSAMPPVSDNVATGHEGFDLGSSSYFF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03469 279 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
Spst4g03469 279 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Spst4g03469 279 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Spst4g03469 279 MobiDBLite consensus disorder prediction 1 17 - -
Spst4g03469 279 CDD AP2 35 91 IPR001471 GO:0003700|GO:0006355
Spst4g03469 279 FunFam Ethylene-responsive transcription factor 2 35 93 - -
Spst4g03469 279 MobiDBLite consensus disorder prediction 1 34 - -
Spst4g03469 279 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Spst4g03469 279 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 128 - -
Spst4g03469 279 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Spst4g03469 279 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Spst4g03469 279 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03469 Spst-Chr4 75342902 75343741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03469 9 270 AP2-EREBP Transcription Factor Family AT5G13910 45.693 1.55e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst4g03469 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03469 K09286 - gmx:100809600 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00405 1 5269280 5269957 Spst4g03469 4 75342902 75343741 PCT