Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03449 ATGGTTAGTAATGCTGGTGGTTACTTGGATTTTTTGATGGAGAGAGAGTTGTGCGGTTTTGTTTTCATCTGGTGGGTGTTCTTAGCTCACCCATTGTGCTTGGTTTCTGCTAACATGGAAGGTGACGCCTTACATAACCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACATTGGTGAATCCATGCACGTGGTTTCATGTAACATGCAACAATGATAATAGTGTCATTAGAGTTGATCTGGGAAATGCTGCCTTGTCTGGTCAACTTGTTCCACAACTTGGCCAGCTCAAAAACTTACAGTATTTGGAACTTTACAGCAATAACATTAGTGGACCAATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATTTGTATCTAAACCGTTTCAGTGGACCTATCCCAGAGTCATTGGGCAAGTTGTTCAAATTGCGTTTCCTCCGGCTTAACAACAACAGCCTGACTGGTCCTATTCCCATGTCACTGACCAATGTTACTGCTCTGCAAGTGCTGGATTTGTCTAACAACCGTCTCTCAGGTGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCCATCAGCTTTACTAACAACTTGGATCTATGTGGCCCAGTCACTGGGCACCCTTGTCCTGGGTCACCTCCCTTTTCTCCTCCTCCTCCTTTTGTCCCACCATCCCCAATCTCAGCTCCAGGGGGAAATAGTGCAACTGGTGCAATAGCTGGAGGAGTTGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTTCCTGCTGAAGAGGATCCTGAAGTACACCTTGGACAGCTTAAGAGGTTCTCACTACGAGAACTGCAAGTTGCAACAGATACTTTTAGTAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACCGAAATCTCCTTCGTTTACGTGGATTCTGTATGACACCAACTGAAAGACTACTTGTATATCCTTACATGGCCAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCAACACATCAACAACCCCTTGATTGGCCAACAAGAAAAAGAATAGCATTGGGATCATCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCGAAGATTATTCATCGTGATGTAAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGATTTTGGGTTGGCCAAACTGATGGACTACAAGGACACCCATGTTACAACTGCTGTACGAGGCACAATTGGGCACATAGCACCAGAGTACCTATCTACTGGTAAATCTTCAGAGAAAACTGATGTATTTGGGTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTTGACTTGGCTCGACTTGCAAATGATGATGATGTTATGTTGCTGGATTGGGTTAAAGGACTTTTGAAAGAAAAGAAGCTAGAAATGCTGGTTGACCCTGATCTCCATAGCAATTACATAGATGCTGAGGTAGAACAGTTAATTCAGGTTGCCCTGCTTTGCACACAAGGATCCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTGCGCCAGGAAGTGGAGCTTGCCCCTCATCCTAATTCTGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCGAGGTAA 1911 0.4485 MVSNAGGYLDFLMERELCGFVFIWWVFLAHPLCLVSANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNRFSGPIPESLGKLFKLRFLRLNNNSLTGPIPMSLTNVTALQVLDLSNNRLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISAPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPTHQQPLDWPTRKRIALGSSRGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHSNYIDAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03449 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Spst4g03449 636 Pfam Protein kinase domain 314 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g03449 636 SUPERFAMILY Protein kinase-like (PK-like) 292 588 IPR011009 -
Spst4g03449 636 Gene3D Ribonuclease Inhibitor 36 223 IPR032675 -
Spst4g03449 636 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 24 598 - -
Spst4g03449 636 Gene3D Phosphorylase Kinase; domain 1 282 389 - -
Spst4g03449 636 Gene3D Transferase(Phosphotransferase) domain 1 390 607 - -
Spst4g03449 636 ProSiteProfiles Protein kinase domain profile. 313 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g03449 636 SUPERFAMILY L domain-like 40 204 - -
Spst4g03449 636 FunFam Somatic embryogenesis receptor kinase 1 36 223 - -
Spst4g03449 636 SMART serkin_6 313 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g03449 636 Pfam Leucine rich repeat N-terminal domain 37 77 IPR013210 -
Spst4g03449 636 FunFam Somatic embryogenesis receptor-like kinase 1 390 607 - -
Spst4g03449 636 FunFam Somatic embryogenesis receptor kinase 1 282 389 - -
Spst4g03449 636 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03449 Spst-Chr4 74982131 74991290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03449 13 636 Receptor kinase-like Gene Family AT1G71830 88.320 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Spst4g03449 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03449 K13418 - gmx:100813918 1124.38