Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03438 ATGGATTTCTCTGAGGGTTATGTATCAAATGAGCATCGCGAGCTTCATCGATCTGCAACAGAAAGTGCGGATCCGTTATCTGTTTCTCCATTGCAACTTGCACCTGTATCACCAAGATCTCCAAAATCTTCTAGGTCCCCTAAATCTCCTAGGTCTCCAAAATCTCCGAAGTCCCCAAGGGTGCAAGGCAAGTGCAGCAATCTTAGTCCACGAAGTGATAGACAATCACATTTTCAAAAAGATGGACGTCCAAAGAAAGGTGGTTCTGGGGGAAAAGGTACCTGGGGTGGATTGCTTGATACAGATGACACAAACGCTCTTGATCCTAATGATCCAAACTATGACAGCACTGAGGAATATGACCATTCAAATGAAAAGAAGCCGAACACAGAGCTTGAGAACTACAAGAAAAAGGCTATAGTAATAGTGGAGGAATATTTTGCCACTGATGATGTTGTTGCAACAATGAATGAAGTTAAAGAATTGGAAAAACCAGAGTATGGCTATTATTTTGTTAAAAAACTTGTCTCTATGTCCATGGACAGACATGACAAAGAAAAGGAAATGGCTGCTATTCTGCTATCTGCACTTTATGCTGACGTATTTGATCCTTCACAAGTTTACAAGGGCTTCAGCAAATTAGTTGAATCAGCAGATGACTTGATTGTAGACATCCCAGACACAGTTGAAGTTCTAGCACTTTTCATAGCTCGGGCCGTGGTTGATGACATACTTCCTCCTGCATTTTTAAAGAAACAGATGGCCTACTTACCCAAAGATTCAAGAGGGGTTGATGTCTTGAAAAAAACTGAGAAAAGCTATCTAGCAGCTCCTCTTCATGCAGAAATCATAGAAAGATGCTGGGGAGGTAGTAAGAACACCACAGTCGATGATGTTAAAGCTAAGATAAACAATTTTTTGAAGGAGTATGTTGTAAGTGGTGACAAGAAAGAAGCCTTCAGATGCATCAAAGATCTGAAAGTTCCTTTCTTCCATCACGAAATAGTGAAACGGGCTCTTATAATGGCCATGGAGAGACGTCAAGCAGAATATCCACTATTAGATCTGTTGAGGGAAGCAGCTGAAGAAGGTTTCATTAACTCTAGCCAAATGTCCAAAGGTTTCAGTCGGTTGATTGATACAGTTGATGACTTATCACTTGATATACCAAATGCACGAGGAATACTGCAGAAGCTGATGTCTAAAGCAGCATCCGAGGGTTGGTTATGTGTGTCATCTTTGAAATCACTTTCTGTGGAGCCTGAAAGGAACACAATAGAAGATAGTGCTGCCAAAAGTTTCAAGGTAAAGACTCAGTCCATCATTCAAGAGTACTTCTTGTCAGGTGATATATTGGAGGTAAATAGCTGTCTTGAACAAGAAAACAGCAAGAACTGTGCTACACTCAATGCAATCTTTGTTAAAAAACTGATAACTCTGGCAATGGATAGGAAGAATAGAGAGAAGGAAATGGCTTCTGTGCTGCTGTCATCTTTGTGTTTCCCAGCTGATGACGTTGTGAGTGGTTTTGTGATGTTGATAGAGGCAGCAGATGATACTGCTCTTGACAATCCTGTAGTTGTTGAGGATCTTGCAATGTTTCTAGCCAGAGCAGTGGTGGATGAAGTCCTAGCTCCACAACACCTTGAAGAGATTGGAACACAGTGTTTGGGGCCAGGTTCAATTGGGAGCAAAGTTCTTCAAATGACAAAGTCATTGCTAAAGGCTAGACTCGCTGGGGAGCGAATCTTGAGGTGTTGGGGTGGTGGGGGTAGTAGCAGGCCTGGATGGGCGTTTGAGGATGTCAAGGACATGATTGGGAAGCTGTTAGAGGAGTATGAGTCTGGAGGAGAAATAAAGGAGGCATGTCGCTGCATGAAAGAGTTAGGAATGCCATTCTTCCATCATGAGGTTGTTAAGAAAGCTTTGGTCACAACCATTGAAAAGAAGAATGAGAGGTTGTGGGGTCTACTCGACAAGTGCTTTGAATCAGGACTAATAACCATGAATCAAATGGTAAAAGGTTTTGGAAGGGTTGCAGAATCTCTTGATGACTTGGCCTTGGATGTCCCCGATGCTAAAAATCAGTTTGCATACTATGTTGAGAGAGCAAAGACTAATGGATGGTTGGACAATTCATTTTGTTTCAGCAAACAGAAACATGCAATGGAGAACGGCACTCACTAA 2187 0.4193 MDFSEGYVSNEHRELHRSATESADPLSVSPLQLAPVSPRSPKSSRSPKSPRSPKSPKSPRVQGKCSNLSPRSDRQSHFQKDGRPKKGGSGGKGTWGGLLDTDDTNALDPNDPNYDSTEEYDHSNEKKPNTELENYKKKAIVIVEEYFATDDVVATMNEVKELEKPEYGYYFVKKLVSMSMDRHDKEKEMAAILLSALYADVFDPSQVYKGFSKLVESADDLIVDIPDTVEVLALFIARAVVDDILPPAFLKKQMAYLPKDSRGVDVLKKTEKSYLAAPLHAEIIERCWGGSKNTTVDDVKAKINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAEYPLLDLLREAAEEGFINSSQMSKGFSRLIDTVDDLSLDIPNARGILQKLMSKAASEGWLCVSSLKSLSVEPERNTIEDSAAKSFKVKTQSIIQEYFLSGDILEVNSCLEQENSKNCATLNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIEAADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQCLGPGSIGSKVLQMTKSLLKARLAGERILRCWGGGGSSRPGWAFEDVKDMIGKLLEEYESGGEIKEACRCMKELGMPFFHHEVVKKALVTTIEKKNERLWGLLDKCFESGLITMNQMVKGFGRVAESLDDLALDVPDAKNQFAYYVERAKTNGWLDNSFCFSKQKHAMENGTH 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03438 728 SUPERFAMILY ARM repeat 431 591 IPR016024 -
Spst4g03438 728 ProSiteProfiles MI domain profile. 433 554 IPR003891 -
Spst4g03438 728 MobiDBLite consensus disorder prediction 1 20 - -
Spst4g03438 728 FunFam programmed cell death protein 4 124 277 - -
Spst4g03438 728 ProSiteProfiles MI domain profile. 298 419 IPR003891 -
Spst4g03438 728 ProSiteProfiles MI domain profile. 134 255 IPR003891 -
Spst4g03438 728 SUPERFAMILY ARM repeat 295 415 IPR016024 -
Spst4g03438 728 MobiDBLite consensus disorder prediction 1 130 - -
Spst4g03438 728 Pfam MA3 domain 300 409 IPR003891 -
Spst4g03438 728 Pfam MA3 domain 136 246 IPR003891 -
Spst4g03438 728 Pfam MA3 domain 435 544 IPR003891 -
Spst4g03438 728 Pfam MA3 domain 603 711 IPR003891 -
Spst4g03438 728 MobiDBLite consensus disorder prediction 22 73 - -
Spst4g03438 728 MobiDBLite consensus disorder prediction 115 130 - -
Spst4g03438 728 ProSiteProfiles MI domain profile. 601 720 IPR003891 -
Spst4g03438 728 Gene3D - 585 718 - -
Spst4g03438 728 Gene3D - 284 417 - -
Spst4g03438 728 PANTHER PROGRAMMED CELL DEATH 4 46 714 IPR039778 GO:0045892
Spst4g03438 728 Gene3D - 121 272 - -
Spst4g03438 728 Gene3D - 422 577 - -
Spst4g03438 728 SUPERFAMILY ARM repeat 128 292 IPR016024 -
Spst4g03438 728 SUPERFAMILY ARM repeat 598 716 IPR016024 -
Spst4g03438 728 SMART ma3_7 299 410 IPR003891 -
Spst4g03438 728 SMART ma3_7 135 246 IPR003891 -
Spst4g03438 728 SMART ma3_7 602 711 IPR003891 -
Spst4g03438 728 SMART ma3_7 434 545 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03438 Spst-Chr4 74799620 74802373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03438 609 711 Eukaryotic Initiation Factors Gene Family AT5G57870 33.019 9.99e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03438 - - gmx:102668745 1301.58