Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03436 ATGGCGGCGGCGAATTCTTCTCTTGCGGTTCCAGCAACAGCATTGAATGGTGTACAATTTGGGAATGCCTCTCTGTATGTCGGGGATCTCGACGCCAATGTGGTGGAGAGTCAGTTGTTTGATCTGTTCAGTCAAGTGGCTCAAGTGGTTTCGATTAGGGTTTGCAGGGACCAGGCTAGGCGATCCTCTCTGGGCTATGCATATGTCAATTTGGCCAATGGACACGACGCTGCTAATGCCATGGAACATTTGAACTTTACTCCCTTAAATGGAAAACCTATTCGGATTATGATTTCTCATCGTGATCCTAGCATTCGGAAAAGCGGATATGCAAATGTCTTCATTAAGAATCTGGACTCAACAATAGATAACAAGGCTCTGCATGACACTTTTGCTGTCTTTGGAACTGTGCTGTCTAGTAAGGTAGCAGTTGACAACTATGGCCAATCAAAAGGGTATGGATTTGTGCAGTTTGACAATGAGGAGAGTGCACAAAATGCTATCAAAAAATTGAATGGCATGTTAATAAATGATAAAAAGGTTTATGTTGGACTCTTCGTTCGGCGTCAGGAAAGGGCTCCTGCAAATGGATCACCACAATTTACTAATGTTTATGTCAAAAACTTTTCTGAAGCATTTACTGATGAAGACCTTAAGCAACTGTTTAATACCTATGGTATCATAACCAGTGCTGTTGTCATGAAAGACTCGGATGGAAAATCTAGGGGTTTTGGTTTCGTCAATTTTGAAAGTCCTGATTCGGCTGCTGCAGCGGTTGAAAAGTTAAATGGAACAATCATGAACCATGATAAAGTTTTGTATGTAGCGAGAGCTCAGAGAAAGGCAGAAAGAGAGGCGGAATTGAAAGCCAAATTTGAGCAACAAAGAAAAGTTAAATTTGAGAAACTACAGGGTGCTAACCTATACCTAAAAAACTTTGATGACAGTTTTACTGACGAAAAATTAAGAGAATTGTTTTCTAAATTTGGAACAACAACGTCTTGTAAGGTGATGGTTGATGCTCTTGGACATAGCAAGGGTTGTGGTTTTGTTGCATTTTCTACTCCTGAGGAAGCAAGAAAAGCTATAAATGAAATGCATGGAAAGATGATCGGAGGAAAACCTCTGTACGTTGCAGTGGCTCAACGTAAAGAAGAAAGAAAAGCTTCTCTTCAGGCACATTTCACACAATTGCAAGTTTCTGGTACAATGGCACCTTTCAACACTGGATATCATCCAGCTACCCCAAGACTTATTCCTCCGCCACTGTACTTTGGTCAAGGAACTGCTCCTTTCATTCCATCACCTCAGCACACTGGTTATGGATTACAACAACCATTTTTATCGGGCATGCGTCCTACATCTGGTGTTCATCCAAATTTCATAGTGCCCTATTACCCTAAGAGAAACAATACATATGGAAGAATTACTGCTCAAAGGGTTGGAAACCTACCACCACCACCACCACCTCCACATATTCAGATGAATTTTTCCAACCAAGGCATGGCTGTAGATAATTATAACACCGGTGCAATATCTAACACCCTTGCTTCAGCTTTGGCTTCTGCTACACCAGAAAATCAACATTTGATGCTTGGTGAAAATTTATATCCACTCGTGGAAAAACTGACCTCAAATAATCAGACAGCAAAGGTGACTGGAATGTTGCTGGAAATGGATCAATCAGAAGTGATTCATTTGATTGAATCTCCTGAGGACTTGAAAATAAAGGTGTCTGAGGCTGTGCAAGTCCTTAATGAGACTACCCAAGGTGGAACTGCTGAAGGTGGTGATGAATTCGGTCGCTCAGCTCATTGA 1818 0.4142 MAAANSSLAVPATALNGVQFGNASLYVGDLDANVVESQLFDLFSQVAQVVSIRVCRDQARRSSLGYAYVNLANGHDAANAMEHLNFTPLNGKPIRIMISHRDPSIRKSGYANVFIKNLDSTIDNKALHDTFAVFGTVLSSKVAVDNYGQSKGYGFVQFDNEESAQNAIKKLNGMLINDKKVYVGLFVRRQERAPANGSPQFTNVYVKNFSEAFTDEDLKQLFNTYGIITSAVVMKDSDGKSRGFGFVNFESPDSAAAAVEKLNGTIMNHDKVLYVARAQRKAEREAELKAKFEQQRKVKFEKLQGANLYLKNFDDSFTDEKLRELFSKFGTTTSCKVMVDALGHSKGCGFVAFSTPEEARKAINEMHGKMIGGKPLYVAVAQRKEERKASLQAHFTQLQVSGTMAPFNTGYHPATPRLIPPPLYFGQGTAPFIPSPQHTGYGLQQPFLSGMRPTSGVHPNFIVPYYPKRNNTYGRITAQRVGNLPPPPPPPHIQMNFSNQGMAVDNYNTGAISNTLASALASATPENQHLMLGENLYPLVEKLTSNNQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAVQVLNETTQGGTAEGGDEFGRSAH 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03436 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Spst4g03436 605 FunFam Polyadenylate-binding protein 16 111 - -
Spst4g03436 605 FunFam Polyadenylate-binding protein 112 185 - -
Spst4g03436 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Spst4g03436 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Spst4g03436 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Spst4g03436 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 270 IPR000504 GO:0003723
Spst4g03436 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Spst4g03436 605 Pfam Poly-adenylate binding protein, unique domain 520 585 IPR002004 GO:0003723
Spst4g03436 605 Gene3D - 112 185 IPR012677 -
Spst4g03436 605 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 23 586 IPR006515 GO:0003723
Spst4g03436 605 FunFam Poly(A) binding protein cytoplasmic 1 like 298 387 - -
Spst4g03436 605 FunFam Polyadenylate-binding protein 508 591 - -
Spst4g03436 605 CDD RRM2_I_PABPs 109 184 IPR045305 -
Spst4g03436 605 Gene3D - 19 111 IPR012677 -
Spst4g03436 605 SMART poly_2 524 588 IPR002004 GO:0003723
Spst4g03436 605 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 512 590 IPR002004 GO:0003723
Spst4g03436 605 SUPERFAMILY RNA-binding domain, RBD 194 285 IPR035979 GO:0003676
Spst4g03436 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Spst4g03436 605 SMART rrm1_1 307 379 IPR000504 GO:0003723
Spst4g03436 605 SMART rrm1_1 112 184 IPR000504 GO:0003723
Spst4g03436 605 SMART rrm1_1 24 97 IPR000504 GO:0003723
Spst4g03436 605 SMART rrm1_1 203 276 IPR000504 GO:0003723
Spst4g03436 605 PANTHER RNA BINDING PROTEIN 23 85 - -
Spst4g03436 605 FunFam Polyadenylate-binding protein 192 288 - -
Spst4g03436 605 Coils Coil 275 295 - -
Spst4g03436 605 CDD RRM3_I_PABPs 201 281 - -
Spst4g03436 605 Gene3D - 510 591 - -
Spst4g03436 605 SUPERFAMILY RNA-binding domain, RBD 302 393 IPR035979 GO:0003676
Spst4g03436 605 CDD RRM4_I_PABPs 305 383 - -
Spst4g03436 605 Gene3D - 188 289 IPR012677 -
Spst4g03436 605 Gene3D - 290 395 IPR012677 -
Spst4g03436 605 SUPERFAMILY RNA-binding domain, RBD 23 191 IPR035979 GO:0003676
Spst4g03436 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Spst4g03436 605 SMART rrm2_1 203 275 IPR003954 GO:0003676
Spst4g03436 605 SMART rrm2_1 24 97 IPR003954 GO:0003676
Spst4g03436 605 SMART rrm2_1 112 184 IPR003954 GO:0003676
Spst4g03436 605 SMART rrm2_1 307 379 IPR003954 GO:0003676
Spst4g03436 605 SUPERFAMILY PABC (PABP) domain 471 590 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03436 Spst-Chr4 74772995 74778627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03436 3 595 Eukaryotic Initiation Factors Gene Family AT4G34110 54.010 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03436 K13126 - gmx:100783163 778.859