Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03433 ATGTCCCAGGGCTTAACTCTAGTCGATACCCTTTACAATCCATCTCATTGTTCTCTTCCACAGGACTTACAAATTGTTCTTTCTCAGCATGAGTCCATATTCCTTCCACGACAAGGACTTCCAACCAAGCGTGCGTACAACCATTCCATTAATTTGCTGCCTGGTTCCTTGATATTTTACAAATCATTGCTAAAACGTGATAGAGAGTTGCTTGGTTCAAGTTCAAAACATCCGCAAGCAATCGTGCTTTGTGCTACGGAGGAGAAAGCTGCACAGTGCTTCAATGCTGCAAAATATATCATAGATAACACAAAATTGAAGTCTGCAAAGGATTGTGCTTCGCCAGATAATGGGCAGTCACAACCCTCAATTGGCCTAATGATTGGAACTCCTTGTGAGATTTTTCAATACATTGAAGATGAGAGCATTGTTCCTTCTGGAATAAGATACTTGGTGTTGGATGAGGCAGATTGCATGCTTGGTAGTGGCCTTAGTCATGAAATTCATAAAATTCTCAGACCATTACAAGATCATGGATCGAAATCTGCTGTCAAAAGATTACAAACTATTTTGGCCATTTCAACCATGGCTGAGGTTTTGGGTGAAGAATCCCCCATTGTAAAGCATCTTGAGTGCCATCATGCGGGAAATATTTCTGCTATGTCTTTAGAAATGGAACAAACAGAAGTCTTTCATTTCACAGAATCTCTTCATGCTCTTAGGAAAAAATTGGAAGAGGCCATGAGTTCCCTTTTGCAAGTAACATCTTGA 771 0.4034 MSQGLTLVDTLYNPSHCSLPQDLQIVLSQHESIFLPRQGLPTKRAYNHSINLLPGSLIFYKSLLKRDRELLGSSSKHPQAIVLCATEEKAAQCFNAAKYIIDNTKLKSAKDCASPDNGQSQPSIGLMIGTPCEIFQYIEDESIVPSGIRYLVLDEADCMLGSGLSHEIHKILRPLQDHGSKSAVKRLQTILAISTMAEVLGEESPIVKHLECHHAGNISAMSLEMEQTEVFHFTESLHALRKKLEEAMSSLLQVTS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03433 256 SMART poly_2 192 254 IPR002004 GO:0003723
Spst4g03433 256 Gene3D - 56 202 IPR027417 -
Spst4g03433 256 Pfam Poly-adenylate binding protein, unique domain 205 249 IPR002004 GO:0003723
Spst4g03433 256 Gene3D - 203 253 - -
Spst4g03433 256 Coils Coil 237 256 - -
Spst4g03433 256 Pfam DEAD/DEAH box helicase 66 195 IPR011545 GO:0003676|GO:0005524
Spst4g03433 256 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 214 IPR014001 -
Spst4g03433 256 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 69 197 - -
Spst4g03433 256 SUPERFAMILY PABC (PABP) domain 197 251 IPR036053 GO:0003723
Spst4g03433 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 197 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03433 186 255 Eukaryotic Initiation Factors Gene Family AT2G23350 43.243 1.70e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03433 - - vra:106768009 334.724