LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g03429	ATGGCGGGAGCTACAGGAAGAACCCTCTTTACCTTCTCCCTCTCTTCCTCTTCTTCTTATTCTTCCCTAACGCGCTTCCTTGCCAAGCGCGCCCCACTACCAAAACCCCTCCCCATTCTCCCGCGCCACCGCTCCCTCTGCTCCGTCGCCGCCGCGCCGGAAACTGCCGATGCGAAGCATTCTTTGTTCCTCGAGAGGCTCCGGGCGCGACACCTCAGGGACGCCGCGAAATCCGCCCCCGAACCGAGGAAGAAGGCCCGGGCCGCCGCCGTTGCGGAGGCTGAGAGAGAGAGGGCGAAGAAGGAGAAGGAGGCTGCGAGTTTCGAGGAGTTGGGAGTGAGTGAGGAAGTTATGGGGGCGGTTAGGGAAATGGGGATTGAAGTACCCACTGAGATACAGGGAATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGTGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTCGCCTATTTGCTGCCCCTTGTTCAGTTGCTAAGACGGGATGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCTCGAGCTGTTGTGCTGTGTCCTACAAGGGAGTTATCTGAGCAGGTTTTTCGAGTGGCAAAATCGATAAGCCACCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCAGGATTAGGCCTCAAGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAACATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAATTTCTGGGCCCATTAAAAAGTCGTGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAAGAGTTTCAAGGCATTGTTCATCTGCGCACATCAAGCTTGCATAAAAAGATTTCATCTGCTCGTCATGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTCCAGGTACTAGAACCAAGCCTTGCAAAGGGTAACAGAGTGATGGTTTTCTGCAATACATTGGATTCTAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACTGTTAATTACCATGGGGAGGTACCAGCAGTGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGATTGATGGTGATGATTGTCCTACGTTGGTTTGCACGGACCTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCCTCAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTTCAAAAGGAAGATCTGAAATGCTCTTTTCTCTTGCAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTCGGACTTGGCCGGCAAAATAGAGGAAGCAATAAGGAAGAATGAGAGTTTGGAGGCAATCACAAAAGAAAGTGTTCGAAGGAACATTGCAAGGACGCACATCACAGAGCAGAAGGGAAAGGGCAGAAAAATGGTTAAAGTTTCTAAAGTCAAGGGCAAATTTGATAGTCGTGCTAGCTCTGGGAATAATGGGTCAGGTAAGAAATCTGGTAAAGGGTCACCAGCCAAATCTATGAAAAAAGGGATTAACGTTTCAAAATCTGGAAAATCTTCTAGTGCAAGTGGCAGCCTCCGAAAGGGTTCATCAGAGAAGAGGCAAACAAGTAAAATGGTCAGTCCCACCAAATCTACGAATTCTAAACTCAATGTTGTGGGGTTTAGGGGAAAAAATTCATCTTCAAATAACAAAAATTCGGTTTTGTGA	1872	0.4712	MAGATGRTLFTFSLSSSSSYSSLTRFLAKRAPLPKPLPILPRHRSLCSVAAAPETADAKHSLFLERLRARHLRDAAKSAPEPRKKARAAAVAEAERERAKKEKEAASFEELGVSEEVMGAVREMGIEVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKSRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAVQRVENLRKFKIDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGSKGRSEMLFSLAGKVTSLVAKKDSDLAGKIEEAIRKNESLEAITKESVRRNIARTHITEQKGKGRKMVKVSKVKGKFDSRASSGNNGSGKKSGKGSPAKSMKKGINVSKSGKSSSASGSLRKGSSEKRQTSKMVSPTKSTNSKLNVVGFRGKNSSSNNKNSVL	623

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g03429	623	CDD	SF2_C_DEAD	337	465	-	-
	Spst4g03429	623	MobiDBLite	consensus disorder prediction	566	623	-	-
	Spst4g03429	623	Coils	Coil	84	111	-	-
	Spst4g03429	623	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	106	134	IPR014014	GO:0003724
	Spst4g03429	623	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	349	512	IPR001650	-
	Spst4g03429	623	MobiDBLite	consensus disorder prediction	538	553	-	-
	Spst4g03429	623	Pfam	Helicase conserved C-terminal domain	349	460	IPR001650	-
	Spst4g03429	623	MobiDBLite	consensus disorder prediction	514	623	-	-
	Spst4g03429	623	SMART	ultradead3	125	334	IPR014001	-
	Spst4g03429	623	Gene3D	-	69	324	IPR027417	-
	Spst4g03429	623	Gene3D	-	325	508	IPR027417	-
	Spst4g03429	623	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	137	470	IPR027417	-
	Spst4g03429	623	SMART	helicmild6	378	460	IPR001650	-
	Spst4g03429	623	MobiDBLite	consensus disorder prediction	514	536	-	-
	Spst4g03429	623	CDD	DEADc	117	316	-	-
	Spst4g03429	623	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	137	324	IPR014001	-
	Spst4g03429	623	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	59	506	-	-
	Spst4g03429	623	Pfam	DEAD/DEAH box helicase	130	313	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst4g03429	Spst-Chr4	74669431	74677399	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst4g03429	106	463	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.671	6.56e-38	143

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g03429	-		-	gmx:100805709	885.56