Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03400 ATGAGGATTATGATAAAGGGTGGTGTTTGGAAGAACACCGAAGATGAAATCCTGAAAGCAGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATTTCTTCACTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTTGATCCCTCCATAAAAAAGACTGAATGGACAAGAGAAGAGGACGAGAAATTACTTCATCTTGCTAAGCTTATGCCTACGCAGTGGAGAACAATTGCTCCAATTGTAGGTCGTACCCCTTCCCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCTGCCTGTGTAAAAGATGAGAACTATGAGCCTGGTGATGATCCACGGAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCCAAACCTGCACGACCTGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCAAACACAAAGGGAAAGAAAGCAAAAAGAAAAGCTAGGGAGAAACAGCTCGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAGAAAAGAGAATTGAAAGCTGCTGGAATTGATATTAGACAGCGGAAGAGAAAAAGGAAAGGAATAGACTACAATGCAGAAATTCCATTTGAGAAAAGGCCTCCTCCTGGATTTTTTGATGTTGCAGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAAGGGAAAAGGAGGGTAGATATTGAGGCTCAATTAAGAAAACAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATATTGCATGCCAACAAACTGAATGATCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCACCCCAGATATCTGATCAGGAATTGGATGAAATTGCAAAGTTGGGTTATGCCAGTGACCTTGCAGGTAGTCAGGAACTTGCTGAAGGTAGTGGTGCTACACGTGCTCTTCTGGCTAATTATGCACAGACACCTGGTCAAGGAGTGACTCCTTTGCGAACCCCTCAAAGAACCCCAGCTGGTAAAGGAGATGCTATTATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAAACACCATTGTTGGGAGGAGAGAATCCGGAGTTGCATCCTTCAGATTTTTCTGGTGTCACTCCTAAGAAAAAGGACATTCAGACTCCAAACCCAATGCTGACTCCTTCTGCAACCCCTGGAGGTGCAGGTCTCACACCTAGAATTGGCATGACGCCAACAAGAGATGGTTTTTCTTTCGGCATGACACCAAAAGGAACTCCTCTGAGGGATGAGTTACGTATTAATGAGGACATGAATATGCATGACAGCACTAAACTTGAGCTGCAGAGGCAGGCTGATATGAGAAGAAGTCTGCGTTCTGGTTTAGGAAGCCTTCCACAGCCCAAGAATGAGTATCAAATAGTGATGGAACCAGTTCCAGAAGACACGGAAGAGCTGGAGGAGAAGATTGAAGAAGATATGTCGGATAGAATTGCTAGAGAAAATGCCGAAGAAGAGGCAAGGCAGCAGGCATTACTTAGAAAACGCTCAAAAGTCCTTCAACGTGAACTTCCCAGGCCTCCTGCTGCATCATTGGAGCTTATAAGAAATTCCTTGATGAGAACCGATGGGGACAAGAGTTCCTTTGTTCCGCCAACCTCTATTGAGCAAGCTGATGAGATGATTAGAAGGGAGCTTCTAACCTTACTTGAGCATGACATTGCTAAGTATCCACTTGATGATAAATTGAATAAGGAGAAAAAGAAAGGAGCCAAGCGTTCTGTAGATGTGTCGGCTGTCCCTGTGATAGAAGATTTTCAGGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAAGCCCAGTATCTTTGTGCAGCAATGGGACATGAAAATGAGCCCCTTGATGAATTTATTGAAGCACATAGAACCTGCCTCAATGATCTCACGTACTTTCCTACCCGCAATGCATATGGTCTCTCCAGTGTTGCTGGAAATATGGAAAAGGTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAACAAATTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGACGGTTATCACTCAAGGCTATGAGATGAGAGTAAAGAAAAGTATCTGGCCACAAATTGAGGCCACTCTCAAGCAGGTGGACATAGCTGCAACTGAGTTAGAATGCTTTAAAGCTTTGCAAAAGCAGGAGCAATTAGCAGCATCACATAGGATAAACAATTTGTGGAGCGAAGTACAGAAGCAAAAGGAACTTGAAAAAACTTTGCAAAGTAGGTACGGGAGTCTAATTGAAGAGCTGGAGAAGATGCAAAATTCGATGAACCAATGCAGATTAAAAGCACAACAGCAAAAAGAAATTGAAGCTAACAATCATGCCCATACTGAGGTCAAGACCAATGAAACTGATGTCCAGGATACAGAGACTGGTGAAGCAGTATCTCACTCAACAGAGGATGGAAATGCTCAACCAGTACCAGTTGAGTCATCACATGATGGAACTGTTGATCATCAAGTAAATATTCTGCAAGACCAATCTACTTCTAGCCCCAGTCATGGCATGGATGTGGATTCTGAAAAAATGCAAATAATAAATGACAGTGATGTTAAATTGACAAATGCTTCACCCGCTGCTGATAAACTAGTTGAAAAAGTGGAAGGTACCTGTCCTACTGATGGCGACACTGACAATAGGGAGACCTTGCCAGAAATTGGTGCTGCAATGGAAACAAGTAGCCTCAATCATGATGTAGTGGCAAATGCTGTAGACACACATAAGACCAGCATGGAAGAAGCCAACGCGGTTGGGGAGGAGACAAATTAG 2910 0.4351 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELAEGSGATRALLANYAQTPGQGVTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKDIQTPNPMLTPSATPGGAGLTPRIGMTPTRDGFSFGMTPKGTPLRDELRINEDMNMHDSTKLELQRQADMRRSLRSGLGSLPQPKNEYQIVMEPVPEDTEELEEKIEEDMSDRIARENAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRTDGDKSSFVPPTSIEQADEMIRRELLTLLEHDIAKYPLDDKLNKEKKKGAKRSVDVSAVPVIEDFQEDEMKDADKLIKEEAQYLCAAMGHENEPLDEFIEAHRTCLNDLTYFPTRNAYGLSSVAGNMEKVAALQNEFENVRNKLDDDKEKMVRLEKKVTVITQGYEMRVKKSIWPQIEATLKQVDIAATELECFKALQKQEQLAASHRINNLWSEVQKQKELEKTLQSRYGSLIEELEKMQNSMNQCRLKAQQQKEIEANNHAHTEVKTNETDVQDTETGEAVSHSTEDGNAQPVPVESSHDGTVDHQVNILQDQSTSSPSHGMDVDSEKMQIINDSDVKLTNASPAADKLVEKVEGTCPTDGDTDNRETLPEIGAAMETSSLNHDVVANAVDTHKTSMEEANAVGEETN 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03400 969 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 803 IPR047242 GO:0000398|GO:0000974
Spst4g03400 969 MobiDBLite consensus disorder prediction 819 834 - -
Spst4g03400 969 CDD SANT_CDC5_II 55 106 IPR047240 -
Spst4g03400 969 FunFam CDC5 cell division cycle 5-like 5 59 - -
Spst4g03400 969 MobiDBLite consensus disorder prediction 399 413 - -
Spst4g03400 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Spst4g03400 969 FunFam CDC5 cell division cycle 5-like 60 120 - -
Spst4g03400 969 Coils Coil 167 187 - -
Spst4g03400 969 SMART sant 58 105 IPR001005 -
Spst4g03400 969 SMART sant 6 55 IPR001005 -
Spst4g03400 969 Coils Coil 796 816 - -
Spst4g03400 969 MobiDBLite consensus disorder prediction 835 862 - -
Spst4g03400 969 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Spst4g03400 969 Gene3D - 60 114 - -
Spst4g03400 969 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Spst4g03400 969 Coils Coil 682 716 - -
Spst4g03400 969 Pfam Myb-like DNA-binding domain 10 70 - -
Spst4g03400 969 CDD SANT 10 53 IPR001005 -
Spst4g03400 969 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Spst4g03400 969 Gene3D - 5 59 - -
Spst4g03400 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Spst4g03400 969 MobiDBLite consensus disorder prediction 380 447 - -
Spst4g03400 969 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Spst4g03400 969 MobiDBLite consensus disorder prediction 819 862 - -
Spst4g03400 969 MobiDBLite consensus disorder prediction 113 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03400 Spst-Chr4 74294600 74299035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03400 1 827 MYB-Related Transcription Factor Family AT1G09770 76.988 0.0 1249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g03400 Myb_Cef 3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03400 K12860 - gmx:100790369 1618.59