Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03396 ATGTCCTTGCTAACTGTGGCGTACCAAAGGGGGTCAGGTGAGTTTATCCGGTTCACCGCGGATCAACGCGGCGGTGATGGTGGCGGCGATGGCGAATATGATCATGGACATGATGGTGATGGTGGTGGTGGTAGCGGTGGTTCACCAGGATTCAATTTTCACCAAGTGATGCAACAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGGGATCCAGAGTTGAGAGAAATGGTTTCAGCTTTGACACACGTGGTTTCATCAGGTTCTGGCCAGAGGGGCACCGAATGGATGCAGCAAAGTGGCTATCCTATGATGTCAGGTTTTGGACATGCACCTTCTCTCTCACGTTTGTCTTCTTTCTCATCTTCTTCTCCTTCTTCTGGACCCTCTTCTGTTGGTCAGAAAAGAGGGAGACAAGAACAAGAGACTAATACCTCTTCTTCACATAACTTGATGCAACAACAAAGTGCTCCAAGACTCTTCCGAACCGTTGGAGACTTCATGGTGCCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAACTCCCACCTCCACAACTACTACTGTAACCGCCGTGGCCACTGCGGTTAGTGAATCCACGCCAGGTGGTGGGGAAAGGAGGAGAAAGTACAGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCTGAAATCCGTGATCCACATAAAGCAGCAAGAGTTTGGCTTGGAACATTCGACACTGAAGAAGCAGCAGCAAGAGCGTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGAGCAGTTCCACCTCTTCAACCTTTCCAACCCGCCACAAGGCTAATCGTTTCTGACTCCTCCACCACTCAATTCCGGCCACTCCCCGCGGCCGTGGCGGCGCCAGCTTTCATTCAGCCGCCACAGATGCAGGGCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACATCAGCATCATCATTATCAACAGCAACAACCACAACCTTCTAGTTTGCTTCAGCAGTTGTACTATAATTCACAATTGGCTTCACTTCAATCATCTTCATTGTTACCATCATCACCTTCATTTTCTTCTTCCGTGTCACCAACTCCATTGCCATTATTCTCAACATCTGCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGGACTATTTCCAGCCACCGGAAATCCTCCCTCCGTCCAGCGGCAGGCCGGAGCTTCCGCCGTCAACATGGTCGGATACCAGTGGCCAGCCACCACCTTCTGGTTGA 1347 0.4929 MSLLTVAYQRGSGEFIRFTADQRGGDGGGDGEYDHGHDGDGGGGSGGSPGFNFHQVMQQQGEVTMQGGSLVSGYNRGDPELREMVSALTHVVSSGSGQRGTEWMQQSGYPMMSGFGHAPSLSRLSSFSSSSPSSGPSSVGQKRGRQEQETNTSSSHNLMQQQSAPRLFRTVGDFMVPSQGDSSSVTEETPTSTTTTVTAVATAVSESTPGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPLQPFQPATRLIVSDSSTTQFRPLPAAVAAPAFIQPPQMQGSSDLIRDYLQYSQLLQSDFQHQHHHYQQQQPQPSSLLQQLYYNSQLASLQSSSLLPSSPSFSSSVSPTPLPLFSTSAQFSSASFPMFSSQQMDYFQPPEILPPSSGRPELPPSTWSDTSGQPPPSG 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03396 448 MobiDBLite consensus disorder prediction 120 162 - -
Spst4g03396 448 SUPERFAMILY DNA-binding domain 217 275 IPR016177 GO:0003677
Spst4g03396 448 SMART rav1_2 217 280 IPR001471 GO:0003700|GO:0006355
Spst4g03396 448 CDD AP2 217 276 IPR001471 GO:0003700|GO:0006355
Spst4g03396 448 Gene3D AP2/ERF domain 216 276 IPR036955 GO:0003700|GO:0006355
Spst4g03396 448 MobiDBLite consensus disorder prediction 177 196 - -
Spst4g03396 448 MobiDBLite consensus disorder prediction 432 448 - -
Spst4g03396 448 Pfam AP2 domain 217 266 IPR001471 GO:0003700|GO:0006355
Spst4g03396 448 PRINTS Ethylene responsive element binding protein signature 240 256 IPR001471 GO:0003700|GO:0006355
Spst4g03396 448 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Spst4g03396 448 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700|GO:0006355
Spst4g03396 448 MobiDBLite consensus disorder prediction 417 448 - -
Spst4g03396 448 PANTHER DNA-BINDING DOMAIN 157 355 IPR044808 GO:0003700|GO:0009873
Spst4g03396 448 MobiDBLite consensus disorder prediction 19 52 - -
Spst4g03396 448 FunFam Ethylene-responsive transcription factor 2 216 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03396 Spst-Chr4 74210416 74212380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03396 214 290 AP2-EREBP Transcription Factor Family AT2G33710 74.359 5.85e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g03396 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03396 - - vun:114180418 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03396 4 74210416 74212380 Spst4g03396 4 74210416 74212380 ECH
Spst1g00250 1 3436212 3439012 Spst4g03396 4 74210416 74212380 PCT
Spst4g03396 4 74210416 74212380 Spst10g00838 10 8922657 8927793 PCT