Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03372 ATGTCCTTCCGCAGTATTGTTCGCGACGTGAGGGACAGTATTGGAAGCTTATCAAGGCGGAGTTTTGACTTAAGGCTTCCTGGTGGTAGCAAGTCGAATGGTTCGGTCCATGAGGTGCATGAACGCCCCACTGTCATACAGAACAGCCGGTGGGCTAGCCTTCCGCCTGAGCTTCTTCGTGATGTTATTAGAAGATTGGAAGAAAGTGAGACAACATGGCCTGCTCGGAAGCATGTGGTTGCATGTGCCGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCGGTCTCCCTGAAGCAGCCTGGTTCGAGGGATGGAACAATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCACCTATTTCTTTGTCTGATTAGTCCTGCACTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCGAAACGGACCAGAAGAACTACCTGCACAGAGTATATTATATCAATGGATGCAGACAACATATCAAGATCCAGTAGCACATACATTGGGAAACTGAGGTCCAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTACAACAATTCTCAGCTGTCTCCTCCAGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTATAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCACGTAGGATGAACTGCACCATGCAGTCAATCCCTATATCCGCCCTTGAGCCTGGTGGCACTGTGCCCGGCCAGCCGGAGCTCCTTCCCCGCCCCCTTGAAGATTCTTTCCGGAGCATATCCCTTGGTAGATCAGTTTACAACTCAACTGAGTTTAGCAGTTCTAGGTTCTCAGACATAGTCGTGGCAGGCAATGAAGAGGAGCACGAAAAGGACAGGCCTCTGGTCCTTAAAAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAGGGGAAGGGTGACTGTTGCATCTGTCAAGAATTTCCAGCTCATAGCTGCAACGCAGCCGCCTGCTGCTGCTGCTCCTCCGCCGCAGCCAGCTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGACATCTTTACTATGGACTATAGATATCCCCTCTCTGCATTCCAGGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1272 0.4803 MSFRSIVRDVRDSIGSLSRRSFDLRLPGGSKSNGSVHEVHERPTVIQNSRWASLPPELLRDVIRRLEESETTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLISPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMQSIPISALEPGGTVPGQPELLPRPLEDSFRSISLGRSVYNSTEFSSSRFSDIVVAGNEEEHEKDRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAAAPPPQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03372 423 ProSitePatterns Tub family signature 2. 408 423 IPR018066 -
Spst4g03372 423 SUPERFAMILY F-box domain 46 95 IPR036047 GO:0005515
Spst4g03372 423 Gene3D Tubby Protein; Chain A 108 423 IPR025659 -
Spst4g03372 423 Pfam Tub family 112 418 IPR000007 -
Spst4g03372 423 ProSitePatterns Ribosomal protein L34e signature. 16 29 IPR018065 -
Spst4g03372 423 Pfam F-box domain 51 97 IPR001810 GO:0005515
Spst4g03372 423 Gene3D - 46 98 - -
Spst4g03372 423 SUPERFAMILY Tubby C-terminal domain-like 100 423 IPR025659 -
Spst4g03372 423 CDD F-box_AtTLP-like 51 95 - -
Spst4g03372 423 FunFam Tubby-like F-box protein 46 99 - -
Spst4g03372 423 MobiDBLite consensus disorder prediction 205 227 - -
Spst4g03372 423 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Spst4g03372 423 FunFam Tubby-like F-box protein 108 423 - -
Spst4g03372 423 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Spst4g03372 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Spst4g03372 423 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Spst4g03372 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Spst4g03372 423 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Spst4g03372 423 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Spst4g03372 423 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Spst4g03372 423 PANTHER TUBBY-RELATED 38 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03372 Spst-Chr4 73834977 73837996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03372 1 423 TUB Transcription Factor Family AT1G76900 69.518 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Spst4g03372 Tub 5.4e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03372 K19600 - gmx:100799499 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03372 4 73834977 73837996 Spst4g03372 4 73834977 73837996 ECH
Spst4g03372 4 73834977 73837996 Spst10g00864 10 9231112 9233633 PCT