Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03364 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGGTCTGGAGATGCAGTGGTGGGAGGAGGTGGTGGGGCTGCATCAGGAGGAGCTCATGACGGTGCTGCTGACGTGGCAGGCGGTGGTAGCGGCGGGGGAGGATCAAATTCAGGGGATGATGAGAGGGGGAGAGTGGAGGAAGGTGACAGGAGCTTTGGTGGGAACAGGTGGCCGAGGCAAGAGACTCTGGCTTTGTTGAAGATACGGTCGGATATGGACGTGGCTTTTAGAGATGCAAGTGTGAAGGGTCCCTTGTGGGAAGAGGTTTCTAGGAAGCTGGCAGAGCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCATAAGAGAACCAAAGAAGGGCGAAGTGGGAAATCCGAAGGCAAGACTTATCGTTTCTTTGATCAATTACAAGCCCTTGACAAAAACCCTGCAATCCATGGCATCCAATCCCCAACACCACCTTCAAAGCCACCACCAGTAACAACTACAGCACTACCAGCAACACCAGTGTCAATAGTGGTAACAACAACACCCTCTTCCATAATGTCTCTTCCCCCAACCACAACAGTGCCATTGCTGCCAGTGTCTAATAACACCACTGTTCCATCAACAACTACACTCCCTATGCCTCAAGGCATTCTCGCCATCACAACCTCTTCCTACCCACCATCAAACCCTACAACATACTTCCCAGCACAAACTCCAAACCCTACAAGCAACAACAGCAAAAACCCTCAGAACACCATCACCCCACCTTCCTTCCCCAACATTCCAACCGATCTTTTGTCGAATTCCAGCTCTTCATCGACTTCCTCCGAGGAAACAACAACGGAGGGAGGGGGAGCAAGGCGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTCATGAAGGAGGTGATAGAGAAGCAGGAGGAGCTGCAAAGGAGGTTCTTGGAGGCCATAGAGAAGAGAGAACAAGAGCGTGTGGTGAGAGAAGAAGCGTGGAGAATGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTAGCACAAGAGAGGTCCATTGCTGCGGCAAAAGATGCTGCTGTTATGGCATTTTTGCAAAAGATGGCCGAACATCAACAACAAGAAAATAATCTTCAGCCAGCATTGAATACCAACAACAACAACAGCATCACTATTGCTCCACAGCAACCGGTGCCACAAGCAACCACAACACCAACGCCAACACCGCAACAAAGACAAACAACAACTGTTCCTGAGGTCCCACCAGTGCAGTCCTTGGCCCCACAACCGCAACCACAGCAGCATCATCAGGTGCAACAACAACAACAACTAGTGATGACTAATGTGGAAATCAATAAAGCTGATAATAACAGTGAGAGTTTGATGCTGGGAGCGAGTTCCTCACGGTGGCCAAAAGTGGAAGTACAAGCACTGATAGATCTGAGAACAAACCTCGAAACAAAGTACCAGGAAAATGGACCAAAAGGGCCACTATGGGAGGAGATCTCAGCCTTGATGAGGAAAATGGGATACAACCGGAATGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGCAACAAGAAGAGGCCCGAAGATTCCAAGACATGTCCCTATTTTCACCAATTGGAGGCTCTATACAAGGAGAAGAACAAGGTGGAGGGCCAAATGAAGCCGGAGAGCACGATGGCGCCGCTCATGGTGCAGCCGGAGCAACAGTGGCCTCCTCAGCAAGTGATGCCGCCAGAAGTAACCATGGAAGACGCCCAGAATGACCCCATGGACCGGCAGCGCCACGAGGACGCGGAGGAGGACGACGAGGACAAGGAAATTGGAGATGAAGACGATGATGAAGACGATGAAGGTGGTAATTATGAGATAGTAGCAAGCAAGCCAGCTTCAGCTTCAGCCGGTGATGCTTCTGCTGAGTGA 1998 0.5025 MLGDSAVLGTGGGGSGDAVVGGGGGAASGGAHDGAADVAGGGSGGGGSNSGDDERGRVEEGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALDKNPAIHGIQSPTPPSKPPPVTTTALPATPVSIVVTTTPSSIMSLPPTTTVPLLPVSNNTTVPSTTTLPMPQGILAITTSSYPPSNPTTYFPAQTPNPTSNNSKNPQNTITPPSFPNIPTDLLSNSSSSSTSSEETTTEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVVREEAWRMQEMQRINREREILAQERSIAAAKDAAVMAFLQKMAEHQQQENNLQPALNTNNNNSITIAPQQPVPQATTTPTPTPQQRQTTTVPEVPPVQSLAPQPQPQQHHQVQQQQQLVMTNVEINKADNNSESLMLGASSSRWPKVEVQALIDLRTNLETKYQENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKVEGQMKPESTMAPLMVQPEQQWPPQQVMPPEVTMEDAQNDPMDRQRHEDAEEDDEDKEIGDEDDDEDDEGGNYEIVASKPASASAGDASAE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03364 665 MobiDBLite consensus disorder prediction 1 69 - -
Spst4g03364 665 MobiDBLite consensus disorder prediction 231 302 - -
Spst4g03364 665 FunFam Trihelix transcription factor GT-2 70 131 - -
Spst4g03364 665 MobiDBLite consensus disorder prediction 231 292 - -
Spst4g03364 665 FunFam Trihelix transcription factor GT-2 483 544 - -
Spst4g03364 665 CDD GT1 68 133 - -
Spst4g03364 665 ProSiteProfiles Myb-like domain profile. 68 126 IPR001005 -
Spst4g03364 665 MobiDBLite consensus disorder prediction 159 179 - -
Spst4g03364 665 MobiDBLite consensus disorder prediction 52 67 - -
Spst4g03364 665 MobiDBLite consensus disorder prediction 165 179 - -
Spst4g03364 665 MobiDBLite consensus disorder prediction 384 435 - -
Spst4g03364 665 MobiDBLite consensus disorder prediction 611 625 - -
Spst4g03364 665 Pfam Myb/SANT-like DNA-binding domain 68 154 IPR044822 -
Spst4g03364 665 Pfam Myb/SANT-like DNA-binding domain 481 568 IPR044822 -
Spst4g03364 665 Gene3D - 483 544 - -
Spst4g03364 665 Gene3D - 70 131 - -
Spst4g03364 665 MobiDBLite consensus disorder prediction 384 454 - -
Spst4g03364 665 Coils Coil 306 337 - -
Spst4g03364 665 SMART sant 479 541 IPR001005 -
Spst4g03364 665 SMART sant 66 128 IPR001005 -
Spst4g03364 665 MobiDBLite consensus disorder prediction 626 645 - -
Spst4g03364 665 ProSiteProfiles Myb-like domain profile. 481 539 IPR001005 -
Spst4g03364 665 MobiDBLite consensus disorder prediction 594 665 - -
Spst4g03364 665 PANTHER FI21293P1 39 616 - -
Spst4g03364 665 CDD GT1 481 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03364 Spst-Chr4 73654743 73657573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03364 66 595 Trihelix Transcription Factor Family AT1G76890 47.523 4.83e-147 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst4g03364 Myb_DNA-bind_4 4.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03364 - - gmx:100804788 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03364 4 73654743 73657573 Spst4g03364 4 73654743 73657573 ECH
Spst4g03364 4 73654743 73657573 Spst10g00867 10 9261655 9264814 PCT