Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03335 ATGGCAAAGATAAGGGAGAAGCTATACGTCACCGTTCCGAGTCTCTTTCGGTGCCCAATTTCCATGGACGTGATGCGGTCCCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCGCTGGCTCGACTCAGGACACGACACGTGTCCAGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTTCACCGCCTCATCCACCTCTGGCTCCTCTCCTCTGAGCCTCCCTCGCCGGAACCCTCCCCCGACAACCTTCGTTCCCTCCTCCGCCAAATCCAAAACGCCGACGATGACCTCGCCGTAACTCTCTCCAAAATCGCTGAATTCGCCACTATCTCCGTCGAGAATCGCCAGAAACTTGCCGCCTTCCCCGGCTTCGACTCCTCCGTCGTCCGCACGCTCGCCGGATGCAGTTCGCGTATCGACGCGTCGGAAAACGCGATCTGCCTTCTCGACTCGGTTCTCCGGGAAAACGGAAATCCAGAGAAAATCCGAAGGCTGATTCTCGACGCTCGCGAACAATGCTTTGGTTCAATGGTTTTCATTTTGCGAAACGGATCTGTAAAATCGAAGATTGAAACAGTCAGGGTTTTGGAGTTTCTCGCGAGCGATTTTAAGTCCTCGAAATTGATCGCGGAGACGCAAGGATTGTTGCCGTTGGTCGCGGGTTTTTTGAAGGACGGTGGAGAGGAGTTGAGCAACGCCGTTTTGTCGTTGCTCGGCGTCGTTTCGGTGACTCACTCCGCGAAGGTGGAACTCGTGAATTGTGGTGTCGTCGAATTTGTTTCGAAGTTGCTGCGAACGTGTTCGTCGGCGACGACGGCGGAGAGGTGTCTGAGGGTGCTAGCGGTGGTGGCGACGTGCGCGGAGGGGAGGGCAGCGATTGCAGCCGAACCATCGTGTGCGGCGGCGGTGGTGGAGAGAGTGACGAAGGCGGCCAAGGCCGCGGCGGAGGACGCGGTGGCGGTGCTGTGGAGCTTGTGCTGTTTGAGCGGTAATGTGAAGGTGAGGGATGACGTGGCAAAGCGAAACGGCGTCGCGGTGATTTTATTGGTTATGCAAAGAGGGTGGGAGGAGCACGTGAGGAGCATGTGTGTGGATTTGATCAAGGTTTTGAAGGGTGCGTGCGAGAACAACGGGTTGGGGTTGAAACTAGGAAGCTATGACACCAAAACCACTCATATCAAACCTTGCTAG 1224 0.5637 MAKIREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQRWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIHLWLLSSEPPSPEPSPDNLRSLLRQIQNADDDLAVTLSKIAEFATISVENRQKLAAFPGFDSSVVRTLAGCSSRIDASENAICLLDSVLRENGNPEKIRRLILDAREQCFGSMVFILRNGSVKSKIETVRVLEFLASDFKSSKLIAETQGLLPLVAGFLKDGGEELSNAVLSLLGVVSVTHSAKVELVNCGVVEFVSKLLRTCSSATTAERCLRVLAVVATCAEGRAAIAAEPSCAAAVVERVTKAAKAAAEDAVAVLWSLCCLSGNVKVRDDVAKRNGVAVILLVMQRGWEEHVRSMCVDLIKVLKGACENNGLGLKLGSYDTKTTHIKPC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03335 407 Gene3D - 88 393 IPR011989 -
Spst4g03335 407 SUPERFAMILY ARM repeat 191 382 IPR016024 -
Spst4g03335 407 PANTHER WDSAM1 PROTEIN 9 387 IPR045185 GO:0061630
Spst4g03335 407 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Spst4g03335 407 SUPERFAMILY RING/U-box 8 81 - -
Spst4g03335 407 CDD RING-Ubox_PUB 13 65 IPR045210 -
Spst4g03335 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 86 IPR013083 -
Spst4g03335 407 FunFam RING-type E3 ubiquitin transferase 4 83 - -
Spst4g03335 407 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Spst4g03335 407 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03335 Spst-Chr4 73289182 73290405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03335 6 406 U-box Gene Family AT5G09800 38.517 1.78e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03335 - - gmx:100786235 581.637