Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03332 ATGGACACTCCTCCTGCTTGGGGTGTTGAAGTTTCTAAACTGGGACACAATGTTGTCAAACTTGAGAGATTATCTAAACTGGCATTGATTGCTTTGAAAAAGGGTGCTCAGCTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCCTTTAGACTTTCCAGTGATGAATCATCTTTAATCTGGCTTACAAGTAGCGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACTTGCGTCCCGAGAAGGACTATTTGTCCTTTTCACTTATTTACGGTAACGGAAAGCGATCACTTGATTTGATTTGCAAAGATAAAGCTGAGGCAGAAGTGTGGATTGCTGGCCTTAAAGCATTGATATCTTCTGGTCAAGGTGGCCGGTCCAAAATTGATGGATGGAGTGATGAGGGTCTCATTCTTGATGATAACAGAGACTTAAAATCGAAAAGTCCAAGTGAAAGTTCCGCTAGTACATCACGAGGCCTCAGTTCTCCTGACATTTCTGCGGGTCTTCCAAATACTTCACCAAAGTCCTTCCGACCGGACAATACAATTTCTGAAAGGTCACATGCACCACCAGACTCAACAACCATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCTAGTACTTCAAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTGTACATATGGGGGGAGGTTATCTGTGATAACGTTAAAGTTGGTGCTGATAAAAACGTCAATTATTTCAGCCCAAGGGCAGATGTACTTCTCCCTAGACCACTGGAAGCCAATGTAGTTTTAGATGTACATCATATAGCTTGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGACGCCTGGGCCATGGTGTTGGGAAGAATTTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCATGTGCTGTTACAATGGCTGGGGAGCTATACACATGGGGTGATGGTACTCATAATGCAGGGCTTCTTGGTCATGGAAGTGATGTCAGCCATTGGATACCAAAGAGAATTGCAGGTCCATTAGAGGGAGTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGCCAGCTGTTTACATTTGGTGACGGAACATTTGGTGTCTTAGGCCATGGAGATAGAGAAAATGTTTCATATCCTAAAGAAGTGGAATCCTTATCTGGACTGAGGACAATAGCTGTAGCATGTGGAGTGTGGCATACTGCGGCTGTTGTAGAGGTTATTGCAACACACTCTGGTACAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGCCTGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGACACAGTTTGACAGCAGGTCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGAAAGCTTCCATGCTTGGTTGGAGACAAGATTTCTGGGGAATCTGTTCAGGAAATTGCATGTGGTGCATATCATGTTGCTGTATTAACATCCAAAAATGAAGTTTATACGTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATACTGAAGATCGAAAAGCACCAGCTTTGATTGAAGCATTAAAAGATAGACATGTGAAATATATAGCATGTGGTTCAAACTACACTGCAGCCATATGCCTTCATAAGTGGGTATCTGGGGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCATAATTGTTATAACTGTGGACTTGTCCACTGCCATTCCTGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCCCCTAATCCCGGCAAGCTGTATCGTGTGTGTGATTCTTGTTATGTAAAATTGAACAAGGTTGCTGAAGCTAGCAATATTAATAGAAGGAATGCCTTGCCTCGTTTATCAGGTGAAAACAAGGATAGGCTAGACAAATCTGACCTAAGATTGTCCAAGGCAATAATTCCTTCTAATGTGGATTTGATAAAGCAACTAGACAGTAAAGCAGCCAAGCAAGGAAAGAAAGGTGATACATTCTCGCTGGTTCGTGCCTCACAGCCACCTTCCCTGCTGCAGCTGAAAGATGTTGCCTTGTCCACTGCTCTTGATCTGAGAAGAACAGTTCCAAAACCGGTGGTTGCACCATCAGGAGTAAGTTCCAGGTCTGTGTCACCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACACCAATTCCAACAACTTCAGGACTTTCCTTCTCGAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTCTAAATCAAGAAGTGCATAAGTTACATGCTCAGGTTGAGAGCCTGAGAGAGAGATGTGAACTGCAAGAATTGGACCTGCAAAAGTCAGCAAAAAAGACTCAAGAAGCTATGTCACTGGCTGCTGAGGAATCTGCTAAATGTAAAGTTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCTGAGAAGCTTCCTCCTGGAGTTTATGATACTGAGAACATAAGGCCAGCTTACCTACCAAATGGTATTGAGCCAAATGGCATCCACTATTCAGACTCAAATGGGGAGCAGCACTCTAGAGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTTGAATCCTCTATGCTGAATAGAACTGTGGGAAATTCACCAGGAACTAATGGAACTAATCTTCACCAGCAAATCCGGAGCCCCGTGACCTCTAATGGGACCAATAATTATCCCGATGTTAAATTGCCAAATGGTGGTGGTGTAATTCAGGCAGGCAGCGATAGCACAGCTGATGGAAGGCATTCTGGGAATATTCACAATGATGAGAGTGGTTTGAAATCGAGGAACACTGCACCGGCTGCTACTACTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAAACTGGTGTCTACATAACACTTGTGGCTCTGCGTGATGGAACGAGAGATCTGAAGCGAGTGCGCTTCAGCCGAAGGAGATTTGGAGAGCACCAAGCAGAAACCTGGTGGTCTGAGAACCGGGACAAGGTATATGAAAGATACAACGTTCGCAGCACCGACAAATCAGCCAGCCAAGCGGGGCGGAGTTCAGAAGGTTCCGGTTCACCTGTCTCCTAA 3378 0.4405 MDTPPAWGVEVSKLGHNVVKLERLSKLALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWLTSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYGNGKRSLDLICKDKAEAEVWIAGLKALISSGQGGRSKIDGWSDEGLILDDNRDLKSKSPSESSASTSRGLSSPDISAGLPNTSPKSFRPDNTISERSHAPPDSTTMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDNVKVGADKNVNYFSPRADVLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIAGPLEGVQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVIATHSGTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKISGESVQEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDTEDRKAPALIEALKDRHVKYIACGSNYTAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYVKLNKVAEASNINRRNALPRLSGENKDRLDKSDLRLSKAIIPSNVDLIKQLDSKAAKQGKKGDTFSLVRASQPPSLLQLKDVALSTALDLRRTVPKPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVHKLHAQVESLRERCELQELDLQKSAKKTQEAMSLAAEESAKCKVAKEVIKSLTAQLKDLAEKLPPGVYDTENIRPAYLPNGIEPNGIHYSDSNGEQHSRAESISGSSLASMGLESSMLNRTVGNSPGTNGTNLHQQIRSPVTSNGTNNYPDVKLPNGGGVIQAGSDSTADGRHSGNIHNDESGLKSRNTAPAATTNQIEAEWIEQYETGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSTDKSASQAGRSSEGSGSPVS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03332 1125 MobiDBLite consensus disorder prediction 202 238 - -
Spst4g03332 1125 SUPERFAMILY FYVE/PHD zinc finger 633 708 IPR011011 -
Spst4g03332 1125 Coils Coil 889 909 - -
Spst4g03332 1125 MobiDBLite consensus disorder prediction 164 196 - -
Spst4g03332 1125 MobiDBLite consensus disorder prediction 965 998 - -
Spst4g03332 1125 MobiDBLite consensus disorder prediction 792 825 - -
Spst4g03332 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 400 410 IPR000408 -
Spst4g03332 1125 Gene3D - 25 140 IPR011993 -
Spst4g03332 1125 MobiDBLite consensus disorder prediction 933 952 - -
Spst4g03332 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 306 IPR000408 -
Spst4g03332 1125 MobiDBLite consensus disorder prediction 1104 1125 - -
Spst4g03332 1125 SMART fyve_4 631 700 IPR000306 GO:0046872
Spst4g03332 1125 SUPERFAMILY PH domain-like 29 134 - -
Spst4g03332 1125 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Spst4g03332 1125 Pfam Transcription factor regulating root and shoot growth via Pin3 1046 1101 IPR013591 -
Spst4g03332 1125 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Spst4g03332 1125 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Spst4g03332 1125 PRINTS Chromosome condensation regulator RCC1 signature 576 597 IPR000408 -
Spst4g03332 1125 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Spst4g03332 1125 PRINTS Chromosome condensation regulator RCC1 signature 518 536 IPR000408 -
Spst4g03332 1125 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Spst4g03332 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Spst4g03332 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Spst4g03332 1125 Gene3D - 468 646 IPR009091 -
Spst4g03332 1125 Gene3D - 200 467 IPR009091 -
Spst4g03332 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Spst4g03332 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 528 577 IPR000408 -
Spst4g03332 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 359 410 IPR000408 -
Spst4g03332 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Spst4g03332 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 582 629 IPR000408 -
Spst4g03332 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 476 523 IPR000408 -
Spst4g03332 1125 Pfam Transcription factor BRX N-terminal domain 884 919 IPR027988 -
Spst4g03332 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 581 632 IPR000408 -
Spst4g03332 1125 FunFam PH, RCC1 and FYVE domains-containing protein 1 217 466 - -
Spst4g03332 1125 CDD PH_PLC_plant-like 28 135 - -
Spst4g03332 1125 FunFam Putative E3 ubiquitin-protein ligase HERC1 639 707 - -
Spst4g03332 1125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 706 IPR013083 -
Spst4g03332 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 477 528 IPR000408 -
Spst4g03332 1125 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 69 904 - -
Spst4g03332 1125 Pfam FYVE zinc finger 633 699 IPR000306 GO:0046872
Spst4g03332 1125 SUPERFAMILY RCC1/BLIP-II 245 634 IPR009091 -
Spst4g03332 1125 MobiDBLite consensus disorder prediction 156 239 - -
Spst4g03332 1125 Pfam Pleckstrin homology domain 69 134 IPR001849 -
Spst4g03332 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Spst4g03332 1125 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 637 699 IPR017455 -
Spst4g03332 1125 Coils Coil 833 874 - -
Spst4g03332 1125 CDD FYVE_like_SF 642 695 - -
Spst4g03332 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Spst4g03332 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 529 580 IPR000408 -
Spst4g03332 1125 MobiDBLite consensus disorder prediction 965 1039 - -
Spst4g03332 1125 FunFam PH, RCC1 and FYVE domains-containing protein 1 467 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03332 Spst-Chr4 73260402 73267773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03332 893 1112 Major Intrinsic Protein MIP AT1G31880 29.545 2.11e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03332 - - gmx:100805364 1973.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03332 4 73260402 73267773 Spst10g00884 10 9522861 9529802 PCT