Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst4g03332 | ATGGACACTCCTCCTGCTTGGGGTGTTGAAGTTTCTAAACTGGGACACAATGTTGTCAAACTTGAGAGATTATCTAAACTGGCATTGATTGCTTTGAAAAAGGGTGCTCAGCTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCCTTTAGACTTTCCAGTGATGAATCATCTTTAATCTGGCTTACAAGTAGCGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACTTGCGTCCCGAGAAGGACTATTTGTCCTTTTCACTTATTTACGGTAACGGAAAGCGATCACTTGATTTGATTTGCAAAGATAAAGCTGAGGCAGAAGTGTGGATTGCTGGCCTTAAAGCATTGATATCTTCTGGTCAAGGTGGCCGGTCCAAAATTGATGGATGGAGTGATGAGGGTCTCATTCTTGATGATAACAGAGACTTAAAATCGAAAAGTCCAAGTGAAAGTTCCGCTAGTACATCACGAGGCCTCAGTTCTCCTGACATTTCTGCGGGTCTTCCAAATACTTCACCAAAGTCCTTCCGACCGGACAATACAATTTCTGAAAGGTCACATGCACCACCAGACTCAACAACCATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCTAGTACTTCAAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTGTACATATGGGGGGAGGTTATCTGTGATAACGTTAAAGTTGGTGCTGATAAAAACGTCAATTATTTCAGCCCAAGGGCAGATGTACTTCTCCCTAGACCACTGGAAGCCAATGTAGTTTTAGATGTACATCATATAGCTTGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGACGCCTGGGCCATGGTGTTGGGAAGAATTTGGTTCAACCTCGTCTAGTTGAAGCATTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCATGTGCTGTTACAATGGCTGGGGAGCTATACACATGGGGTGATGGTACTCATAATGCAGGGCTTCTTGGTCATGGAAGTGATGTCAGCCATTGGATACCAAAGAGAATTGCAGGTCCATTAGAGGGAGTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGCCAGCTGTTTACATTTGGTGACGGAACATTTGGTGTCTTAGGCCATGGAGATAGAGAAAATGTTTCATATCCTAAAGAAGTGGAATCCTTATCTGGACTGAGGACAATAGCTGTAGCATGTGGAGTGTGGCATACTGCGGCTGTTGTAGAGGTTATTGCAACACACTCTGGTACAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGCCTGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGACACAGTTTGACAGCAGGTCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGAAAGCTTCCATGCTTGGTTGGAGACAAGATTTCTGGGGAATCTGTTCAGGAAATTGCATGTGGTGCATATCATGTTGCTGTATTAACATCCAAAAATGAAGTTTATACGTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATACTGAAGATCGAAAAGCACCAGCTTTGATTGAAGCATTAAAAGATAGACATGTGAAATATATAGCATGTGGTTCAAACTACACTGCAGCCATATGCCTTCATAAGTGGGTATCTGGGGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCATAATTGTTATAACTGTGGACTTGTCCACTGCCATTCCTGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCCCCTAATCCCGGCAAGCTGTATCGTGTGTGTGATTCTTGTTATGTAAAATTGAACAAGGTTGCTGAAGCTAGCAATATTAATAGAAGGAATGCCTTGCCTCGTTTATCAGGTGAAAACAAGGATAGGCTAGACAAATCTGACCTAAGATTGTCCAAGGCAATAATTCCTTCTAATGTGGATTTGATAAAGCAACTAGACAGTAAAGCAGCCAAGCAAGGAAAGAAAGGTGATACATTCTCGCTGGTTCGTGCCTCACAGCCACCTTCCCTGCTGCAGCTGAAAGATGTTGCCTTGTCCACTGCTCTTGATCTGAGAAGAACAGTTCCAAAACCGGTGGTTGCACCATCAGGAGTAAGTTCCAGGTCTGTGTCACCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACACCAATTCCAACAACTTCAGGACTTTCCTTCTCGAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTCTAAATCAAGAAGTGCATAAGTTACATGCTCAGGTTGAGAGCCTGAGAGAGAGATGTGAACTGCAAGAATTGGACCTGCAAAAGTCAGCAAAAAAGACTCAAGAAGCTATGTCACTGGCTGCTGAGGAATCTGCTAAATGTAAAGTTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCTGAGAAGCTTCCTCCTGGAGTTTATGATACTGAGAACATAAGGCCAGCTTACCTACCAAATGGTATTGAGCCAAATGGCATCCACTATTCAGACTCAAATGGGGAGCAGCACTCTAGAGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTTGAATCCTCTATGCTGAATAGAACTGTGGGAAATTCACCAGGAACTAATGGAACTAATCTTCACCAGCAAATCCGGAGCCCCGTGACCTCTAATGGGACCAATAATTATCCCGATGTTAAATTGCCAAATGGTGGTGGTGTAATTCAGGCAGGCAGCGATAGCACAGCTGATGGAAGGCATTCTGGGAATATTCACAATGATGAGAGTGGTTTGAAATCGAGGAACACTGCACCGGCTGCTACTACTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAAACTGGTGTCTACATAACACTTGTGGCTCTGCGTGATGGAACGAGAGATCTGAAGCGAGTGCGCTTCAGCCGAAGGAGATTTGGAGAGCACCAAGCAGAAACCTGGTGGTCTGAGAACCGGGACAAGGTATATGAAAGATACAACGTTCGCAGCACCGACAAATCAGCCAGCCAAGCGGGGCGGAGTTCAGAAGGTTCCGGTTCACCTGTCTCCTAA | 3378 | 0.4405 | MDTPPAWGVEVSKLGHNVVKLERLSKLALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWLTSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYGNGKRSLDLICKDKAEAEVWIAGLKALISSGQGGRSKIDGWSDEGLILDDNRDLKSKSPSESSASTSRGLSSPDISAGLPNTSPKSFRPDNTISERSHAPPDSTTMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDNVKVGADKNVNYFSPRADVLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWIPKRIAGPLEGVQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPKEVESLSGLRTIAVACGVWHTAAVVEVIATHSGTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKISGESVQEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDTEDRKAPALIEALKDRHVKYIACGSNYTAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYVKLNKVAEASNINRRNALPRLSGENKDRLDKSDLRLSKAIIPSNVDLIKQLDSKAAKQGKKGDTFSLVRASQPPSLLQLKDVALSTALDLRRTVPKPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVHKLHAQVESLRERCELQELDLQKSAKKTQEAMSLAAEESAKCKVAKEVIKSLTAQLKDLAEKLPPGVYDTENIRPAYLPNGIEPNGIHYSDSNGEQHSRAESISGSSLASMGLESSMLNRTVGNSPGTNGTNLHQQIRSPVTSNGTNNYPDVKLPNGGGVIQAGSDSTADGRHSGNIHNDESGLKSRNTAPAATTNQIEAEWIEQYETGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSTDKSASQAGRSSEGSGSPVS | 1125 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst4g03332 | 1125 | MobiDBLite | consensus disorder prediction | 202 | 238 | - | - | |
Spst4g03332 | 1125 | SUPERFAMILY | FYVE/PHD zinc finger | 633 | 708 | IPR011011 | - | |
Spst4g03332 | 1125 | Coils | Coil | 889 | 909 | - | - | |
Spst4g03332 | 1125 | MobiDBLite | consensus disorder prediction | 164 | 196 | - | - | |
Spst4g03332 | 1125 | MobiDBLite | consensus disorder prediction | 965 | 998 | - | - | |
Spst4g03332 | 1125 | MobiDBLite | consensus disorder prediction | 792 | 825 | - | - | |
Spst4g03332 | 1125 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 400 | 410 | IPR000408 | - | |
Spst4g03332 | 1125 | Gene3D | - | 25 | 140 | IPR011993 | - | |
Spst4g03332 | 1125 | MobiDBLite | consensus disorder prediction | 933 | 952 | - | - | |
Spst4g03332 | 1125 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 246 | 306 | IPR000408 | - | |
Spst4g03332 | 1125 | MobiDBLite | consensus disorder prediction | 1104 | 1125 | - | - | |
Spst4g03332 | 1125 | SMART | fyve_4 | 631 | 700 | IPR000306 | GO:0046872 | |
Spst4g03332 | 1125 | SUPERFAMILY | PH domain-like | 29 | 134 | - | - | |
Spst4g03332 | 1125 | ProSiteProfiles | BRX domain profile. | 1047 | 1102 | IPR013591 | - | |
Spst4g03332 | 1125 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1046 | 1101 | IPR013591 | - | |
Spst4g03332 | 1125 | PRINTS | Chromosome condensation regulator RCC1 signature | 400 | 416 | IPR000408 | - | |
Spst4g03332 | 1125 | PRINTS | Chromosome condensation regulator RCC1 signature | 416 | 430 | IPR000408 | - | |
Spst4g03332 | 1125 | PRINTS | Chromosome condensation regulator RCC1 signature | 576 | 597 | IPR000408 | - | |
Spst4g03332 | 1125 | PRINTS | Chromosome condensation regulator RCC1 signature | 309 | 325 | IPR000408 | - | |
Spst4g03332 | 1125 | PRINTS | Chromosome condensation regulator RCC1 signature | 518 | 536 | IPR000408 | - | |
Spst4g03332 | 1125 | PRINTS | Chromosome condensation regulator RCC1 signature | 359 | 375 | IPR000408 | - | |
Spst4g03332 | 1125 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 414 | 465 | IPR000408 | - | |
Spst4g03332 | 1125 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 359 | 413 | IPR000408 | - | |
Spst4g03332 | 1125 | Gene3D | - | 468 | 646 | IPR009091 | - | |
Spst4g03332 | 1125 | Gene3D | - | 200 | 467 | IPR009091 | - | |
Spst4g03332 | 1125 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 307 | 355 | IPR000408 | - | |
Spst4g03332 | 1125 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 528 | 577 | IPR000408 | - | |
Spst4g03332 | 1125 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 359 | 410 | IPR000408 | - | |
Spst4g03332 | 1125 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 414 | 462 | IPR000408 | - | |
Spst4g03332 | 1125 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 582 | 629 | IPR000408 | - | |
Spst4g03332 | 1125 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 476 | 523 | IPR000408 | - | |
Spst4g03332 | 1125 | Pfam | Transcription factor BRX N-terminal domain | 884 | 919 | IPR027988 | - | |
Spst4g03332 | 1125 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 581 | 632 | IPR000408 | - | |
Spst4g03332 | 1125 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 217 | 466 | - | - | |
Spst4g03332 | 1125 | CDD | PH_PLC_plant-like | 28 | 135 | - | - | |
Spst4g03332 | 1125 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 639 | 707 | - | - | |
Spst4g03332 | 1125 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 647 | 706 | IPR013083 | - | |
Spst4g03332 | 1125 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 477 | 528 | IPR000408 | - | |
Spst4g03332 | 1125 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 69 | 904 | - | - | |
Spst4g03332 | 1125 | Pfam | FYVE zinc finger | 633 | 699 | IPR000306 | GO:0046872 | |
Spst4g03332 | 1125 | SUPERFAMILY | RCC1/BLIP-II | 245 | 634 | IPR009091 | - | |
Spst4g03332 | 1125 | MobiDBLite | consensus disorder prediction | 156 | 239 | - | - | |
Spst4g03332 | 1125 | Pfam | Pleckstrin homology domain | 69 | 134 | IPR001849 | - | |
Spst4g03332 | 1125 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 307 | 358 | IPR000408 | - | |
Spst4g03332 | 1125 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 637 | 699 | IPR017455 | - | |
Spst4g03332 | 1125 | Coils | Coil | 833 | 874 | - | - | |
Spst4g03332 | 1125 | CDD | FYVE_like_SF | 642 | 695 | - | - | |
Spst4g03332 | 1125 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 452 | 462 | IPR000408 | - | |
Spst4g03332 | 1125 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 529 | 580 | IPR000408 | - | |
Spst4g03332 | 1125 | MobiDBLite | consensus disorder prediction | 965 | 1039 | - | - | |
Spst4g03332 | 1125 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 467 | 638 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst4g03332 | Spst-Chr4 | 73260402 | 73267773 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst4g03332 | 893 | 1112 | Major Intrinsic Protein MIP | AT1G31880 | 29.545 | 2.11e-15 | 77.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst4g03332 | - | - | gmx:100805364 | 1973.75 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst4g03332 | 4 | 73260402 | 73267773 | Spst10g00884 | 10 | 9522861 | 9529802 | PCT |