Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03317 ATGATGGATGATTTTTGGAGCACGTTTTGTGGAGAATCTGATTGTCCTGGAAATGGAGGAAAACCACCTTTCTGTTACGATTTCAAGATTTTGAAAGATCCTTCTTCGTGCACCGACCAATTCTTGATCATCTGCTTTGATGTTTTACTACTGATCATGCTAGCATTCATTTTGATGCAGAAGTCTTTTTTCAAACCATTTCGTGGCATTTGGGTTATAGAGGAGGAAGTTAAGGAAGAACACACATTCGTTTTTCCTCTTAAGTTGGTGGTTGGCAGAGCTCTTTCAAGGATTCAGATGGTTGTTAATAAGCTTTTTCTGTGTGCTTTGTCCATGTATTATACAGTAACTCCATTTGCCAAAGCTGGATTCTTTAGTAAGATTACATTTTGGTGGTTGAGTCCATTGATAAAAAAGGGCCAAAAGAAAACCTTGCTAGATGAGGATGTCCCAAAGTTGTCGGAGTCAGATCGAGCAGAAAGGTGCTATTCTTCATTTGTAGATCACTTGAGCAGGCAGAAGAAAAAGGAACCATTGTCAGAAAAATCATATTTGTGGGCGATAATTTTGTGCCATCAAAGAGAGATTTTGATATCAGGACTTTTTGCATTGCTCAAGGTACTCACTCTGTCTGCTAGTCCTCTACTACTGAATGCCTTTATATTGGTGTATGAGGGTAATGGAAGTTTCAAATACGAAGGTTATGCATTAGCCATATCATTTTTATTTATAAAGATTATAGAATCCATATCACAAAGGCAATGGTATTTCCGTAGCAGACTTGTTGGTATGAAACTTAGGTCACAACTTACTGCAGCCATTTGCCAAAAACAGCTGAGATTATCCAACGCTGCTAGATTGATTCACTCTGGTGGTGAGGTAATGAATTATGTGACTGTAGATGCTTACAAGATTGGAGAATTTCCATTTTGGTTTCACCAAACATGGACAATAATTGTCCAACTATGTACTGTATTAGTAATTCTTTATAATGCAGTTGGGCTTGCAACAATTGCCGCATTGGTGGTGATAGTTCTCACAGTGCTTTGCAATACTCCCATAGCAAAGTTACAACATAAGTTTTTGACCGAACTTTTGGTGGCAGAAGATGAGAGATTGAAGGCTTGTTCTGAGGCTTTAGTAAATATGAAAGTGTTGAAGTTATATGCGTGGGAAATCCATTTTAAAAATTCTATAGAAAGCTTAAGAAATGTGGAACTCAAATGGTTATCTTCAGTGCTATTTCAGAAAGCATACAACATCATTCTCTTTTGGTTTTCGCCTATTTTGGTCTATGTGGCAACATTCGTGGCATGTTACTTCTTAAAAATTCCTTTACATGCAAATAACCTTTTCACTTTTGTGGCAACTCTGCGCCTTGTGCAAGATCCGATTTCAATAATCCCAGATGTAATTGGAGTGGTCATTCAAGCCAAAGTTGCATTTTCACGGATTGTAAAATTCCTTGAAGCTCCAGAGCTGCAGAGAGAAAGTGTCAGGAAGAGGTGCTGCAATGAGAAGCTCAAGGGTTCAACTTTAATCAAATCCGCAGACTTTTCATGGGAATGTAATGTATCTAAGCCAACACTGAGAAACATAAATTTAGAGGTTAGACCTGGGCAAAAGATTGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTACTGGCAGCAATTCTTGGAGAAGTTCCTAATACCAAGGGAAATATTGCGGTTTATGGGAAGCTTGCGTATGTTTCTCAAACAGCATGGATACCAACAGGAACAATACAGGAAAACATTTTGTTTGGATCAGCTTTGGATGTTCAAAGGTATCAAGAGACACTTCATAGGTCTTCATTGGTGAAGGACCTTGAGTTGTTTCCCCATGGTGAGCTCACAGAAATAGGAGAGAGAGGAGTTAACTTGAGTGGGGGTCAGAAGCAACGAGTTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACAAACCGCCACAAATTTGTTTAATGAATACATATTGGAAGGTCTTGCAGGGAAGACAGTTCTACTAGTGACTCATCAAGTTGACTTTCTGCCTGCATTTGATTCCATTTTGTTTATATCAGAAGGAACAATTCTACAAGCTGCCCCTTATCACCAATTACTGGTCTCTAGCAAAGAATTTCGGGAGCTTGTCAATGCTCACAGAGAGACAGCTGGTTCTGGTCAGCTTGCAAATGGGACTTCTACCCAGAGACATTCAAATTCTGGCAGAGAGATTAGTCAAATTTTCGTAGAGAAGCAATTTAAACCATCAAAAGATGATCAACTAATTAAGCAAGAAGAGAGAGAAAGGGGAGATATAGGGTTGAAGCCTTATTTACAGTATCTGAATCAGAACAAAGGTTACATATACACCTTTGTGGCCTCTCTATCTCACCTTCTGTTTGTGATCTGCCAGATATTGCAAAACTCATGGATGGCTGCCAATGTTGACAATCCCCAAGTCAACACACTGCAATTGATTGTTGTTTACTTGCTTATTGGAGTTAGTTCTACAGTGTTCGTGGTTAGCAGAAGTCTTCTTGCAGTTGCTTTGGGCCTTCAATCGTCAAAATATTTATTTTCTCAGTTGGTGAATTCCCTATTCCGTGCACCTATGTCTTTTTATGACTCCACACCTTTGGGAAGGATACTTAGCAGGGTCTCATTGGATTTGAGCATTGCGGATCTTGATATCCCATTTGTTCTCACATATACCGTTGGATCTACTATAAACTGCTATGCTGATCTCGTAGTTTTGGCTATCATTACGTGGCAAGTCTTGTTTGTTGCTGTAGCAATGGTTTATTTTGTTATCCGATTGCAGAGACACTACTTGGTCGCTGCAAAAGAATATATGAGAATGAATGGCACAACCAAGTCCTTTGTAGCTAATCATGTAGCCGAAACTGTTGCTGGAGCAATTACTATAAGGGCTTTTGAAGAGGAAGATCAGAGGCTAAACCAGTATATGCATATACCAAGTGAGGCCGAAGAAGTAATAAAAGGAAAGCGCCCTCCTTTGAATTGGCCAGATGCAGGCAAAGTAGAAATATATGATCTGCAGATAAGATATAGGCCACAAGAGCCACTTGTACTCGATGGTATCACTTGCACTTTTGAAGGAGGGCACAAGATTGGTATTGTTGGAAGGACAGGCAGTGGAAAGTCAACTCTTATCAGTGCTTTGTTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATCATAGTTGATGGCATAAACATCTCTTCTATTGGCCTTCATGATTTGAGCTTCCATGTGAAGGTTCTCGGTAAATGTCAATTGCAAGAGGCAGTCCAGGATAAAGAAGGTGGCTTAGACTCGTCAGTTGTTGAAGACGGATCCAACTGGAGCATTGGACAAAGGCAGTTATTCTGTTTGGGGCGTGCTCTTTTGAGGAGAAGTAAGATATTGGTCTTGGATGAAGCTACTGCATCAATTGATAATGCAACCGATTTGATTCTACAGAAAAGCATTAGGACTGAGTTTGGAAATTGTACAGTAATCACTGTAGCCCACAGGATACCAACGGTGATGGATTGTACTATGGTTCTTGCCATCAGTGATGGAAAATTGGTAGAGTATGATGAGACAATGAACCTGATGAAGAATGAAAAATCATTGTTTGGTCAGCTTGTCAAGGAATACTGGTCTCATTTTCAGTGTGCAGAATCACATTGA 3744 0.398 MMDDFWSTFCGESDCPGNGGKPPFCYDFKILKDPSSCTDQFLIICFDVLLLIMLAFILMQKSFFKPFRGIWVIEEEVKEEHTFVFPLKLVVGRALSRIQMVVNKLFLCALSMYYTVTPFAKAGFFSKITFWWLSPLIKKGQKKTLLDEDVPKLSESDRAERCYSSFVDHLSRQKKKEPLSEKSYLWAIILCHQREILISGLFALLKVLTLSASPLLLNAFILVYEGNGSFKYEGYALAISFLFIKIIESISQRQWYFRSRLVGMKLRSQLTAAICQKQLRLSNAARLIHSGGEVMNYVTVDAYKIGEFPFWFHQTWTIIVQLCTVLVILYNAVGLATIAALVVIVLTVLCNTPIAKLQHKFLTELLVAEDERLKACSEALVNMKVLKLYAWEIHFKNSIESLRNVELKWLSSVLFQKAYNIILFWFSPILVYVATFVACYFLKIPLHANNLFTFVATLRLVQDPISIIPDVIGVVIQAKVAFSRIVKFLEAPELQRESVRKRCCNEKLKGSTLIKSADFSWECNVSKPTLRNINLEVRPGQKIAICGEVGSGKSTLLAAILGEVPNTKGNIAVYGKLAYVSQTAWIPTGTIQENILFGSALDVQRYQETLHRSSLVKDLELFPHGELTEIGERGVNLSGGQKQRVQLARALYQNADVYLLDDPFSAVDAQTATNLFNEYILEGLAGKTVLLVTHQVDFLPAFDSILFISEGTILQAAPYHQLLVSSKEFRELVNAHRETAGSGQLANGTSTQRHSNSGREISQIFVEKQFKPSKDDQLIKQEERERGDIGLKPYLQYLNQNKGYIYTFVASLSHLLFVICQILQNSWMAANVDNPQVNTLQLIVVYLLIGVSSTVFVVSRSLLAVALGLQSSKYLFSQLVNSLFRAPMSFYDSTPLGRILSRVSLDLSIADLDIPFVLTYTVGSTINCYADLVVLAIITWQVLFVAVAMVYFVIRLQRHYLVAAKEYMRMNGTTKSFVANHVAETVAGAITIRAFEEEDQRLNQYMHIPSEAEEVIKGKRPPLNWPDAGKVEIYDLQIRYRPQEPLVLDGITCTFEGGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGINISSIGLHDLSFHVKVLGKCQLQEAVQDKEGGLDSSVVEDGSNWSIGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQKSIRTEFGNCTVITVAHRIPTVMDCTMVLAISDGKLVEYDETMNLMKNEKSLFGQLVKEYWSHFQCAESH 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03317 1247 CDD ABC_6TM_ABCC_D2 803 1007 IPR044726 GO:0140359
Spst4g03317 1247 FunFam Multidrug resistance-associated protein 1 494 756 - -
Spst4g03317 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1022 1232 IPR027417 -
Spst4g03317 1247 Gene3D - 1015 1109 IPR027417 -
Spst4g03317 1247 Gene3D - 1110 1236 IPR027417 -
Spst4g03317 1247 Pfam ABC transporter 1048 1166 IPR003439 GO:0005524
Spst4g03317 1247 SUPERFAMILY ABC transporter transmembrane region 806 1007 IPR036640 GO:0005524|GO:0016020
Spst4g03317 1247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 119 1000 - -
Spst4g03317 1247 FunFam ABC transporter C family member 10 180 493 - -
Spst4g03317 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 735 IPR027417 -
Spst4g03317 1247 CDD ABC_6TM_ABCC_D1 198 485 IPR044746 GO:0140359
Spst4g03317 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 514 735 IPR003439 GO:0005524
Spst4g03317 1247 ProSitePatterns ABC transporters family signature. 637 651 IPR017871 GO:0005524|GO:0016887
Spst4g03317 1247 Pfam ABC transporter transmembrane region 805 1007 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03317 1247 Pfam ABC transporter transmembrane region 197 461 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03317 1247 Pfam ABC transporter 530 664 IPR003439 GO:0005524
Spst4g03317 1247 CDD ABCC_MRP_domain2 1029 1217 - -
Spst4g03317 1247 SMART AAA_5 1057 1219 IPR003593 GO:0016887
Spst4g03317 1247 SMART AAA_5 539 712 IPR003593 GO:0016887
Spst4g03317 1247 SUPERFAMILY ABC transporter transmembrane region 185 490 IPR036640 GO:0005524|GO:0016020
Spst4g03317 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1031 1235 IPR003439 GO:0005524
Spst4g03317 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 197 477 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03317 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 808 1005 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03317 1247 Gene3D ABC transporter type 1, transmembrane domain 168 494 IPR036640 GO:0005524|GO:0016020
Spst4g03317 1247 Gene3D ABC transporter type 1, transmembrane domain 746 1014 IPR036640 GO:0005524|GO:0016020
Spst4g03317 1247 CDD ABCC_MRP_domain1 514 712 - -
Spst4g03317 1247 Gene3D - 513 742 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03317 Spst-Chr4 73052371 73060481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03317 506 759 Calmodulin-binding Proteins AT2G36910 26.740 3.69e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03317 K05666 - gmx:100811468 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03317 4 73052371 73060481 Spst4g03317 4 73052371 73060481 ECH