Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03315 ATGTCTAATGTAGCTAAATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAGTTGGAGAACTTCCATTTTGGTTTCACCAAACATGGACAATAAGCATTCAACTATGCATAGTGTTAGCAATAATTTTCCATACAATTGGGCTAGCAACAGTGGCCTCATTGGTGGTGATAGTTCTTATGTTGTTTTGCAATACTCCACTAGCAAAATTACAGCACAAGTTGCAGACTAAACTCATGGTTGCTCAAGATGAGAGACTGAAGGCAAGTTCTGAGGCTCTCGTGAATATGAAAGTGCTAAAACTATATGCATGGGAAACTCATTTTAAAATTGTTATAGAGAAGTTACGTAATGTAGAACTCAAATTGTTATCGTCAGTGCAATTAAGAAAGGCATACGATATATTTCTGTTTTGGACTGCACCTATTTTGCTCACTGCTGCTTCTTTTTGGGCATGTTACTTCCTGAAAATTCCATTGCATGCAAATAATGTTTTCACATTTTTGGCTACTTTACGCCTTGTGCAAGAGCCAATAACAGCCATTCCTGATATTGTTGGGGCAGTCATTCAAGCAAATGTTGCTTTTACCCGGATTGTTAAATTCCTCCAAGCTCCTGAACTTCAAAGTGAAAATTTATGGAAAAGGGATTTTGACGATAACATTAGAGACTCAATTTTAATCAAATCGGCTGACTTTTCATGGGAAGGTAATGAATCAAGCCTAACCTTGAGGAACATAACCTTGGAGGTTAAACCCGGGCAGAAAGTGGCAATATGCGGAGAAGTCGGCTCAGGAAAATCAACCCTTTTAGCAACACTTCTCGGAGAAGTTCCCAAGACAAATGGAACAGTTGAAATTTATGGAAAGATTGCGTATGTTTCACAAACAGCATGGATAGAGTCGGGTACAATACAAGAAAATATTTTGTTTGGATCTGATTTGGACATGCATAGATATCAGGAAACACTTCAGAGATCTTCACTAGTTAAGGACATTGAGTTGTTTCCCCATGGTGACATCACCGAAATAGGTGAAAGAGGGATTAACTTGAGTGGAGGTCAAAAGCAGAGAATTCAACTTGCGCGTGCTCTTTATCAGAATGCTGATGTATATCTGTTGGATGATCCATTCAGTGCTGTTGATGCAAATACGGCTACAAGTTTGTTTAATGAATACATCATGGAAGGACTGAAGGGAAAGACTGTGTTACTCGTGACACATCAAGTTGACTTTCTCCCCGCATTTGATTCTGTTTTGTTGATGTCAAATGGGAAAATCCTAAAAGATGCTCCTTATCACCAACTTTTGAGGTCAAGCCATGAATTCCAGGACCTAGTCAATGCTCACAAGGAGACTTCTAATTCTAATCAGTTTGTGAATGTTACTTCTTCCCAGAGGCAGTTAACAACTGCTAGAGAAATTACTCAAACTTTTATGGAGAAACAGGTGAAAGAAACAATCGAAAATCAATTAATTAAGCAAGAAGAGAGAGAGAAAGGTGACACAGGATTGAAGCCTTACCTACAGTATCTGAATGGGATGAAAGGCTATATATACTATTTTGTGGTTTCCCTCTGTTTCACTGCCTTTGTTATTTGCCAGATACTGCAAAACTCATGGATGGCTGCTAATGTAGACAACCCCCATGTTAGCACATTACAATTGATTGTTGTTTACTGCTTGATTGCAGCAATTTCACCTATTTTCTTGTTGATCAGATGTCTAGCTACAGTTTCTTTGGGTATGAAAACATCAAAAAGATTATTTGAACAGTTAATGGACTCCCTTTTTCGTGCACCCATGTCATTTTATGACTCTACACCGTTGGGAAGGATACTTAGTAGGGTTTCATCAGATATGAGCATTTTGGATCTTGACATCCCCTTTATCCTTGGGTTTGCTGTGGGAGGACCTATATATTTGTGTTCATATATTGTTGTCTTAGCAGTTATCACTTGGCAAGTGTTGGTTGTCTCTATTCCAATGGTGTACATTGCAATTCGCTTACAGAGATACTTTTTGGCCTCTGCTAAAGAAGTGATGAGGATGAATGGCACAACAAAATCCTCTCTAGCAAATCATGTTGCTGAAACTGTTGCTGGAGCTGTGACAATAAGGGCATTTGAGGACGAAGATCGTTTCTTTGAGAAGAATCTTGATCTAATTGATGCCAATGCCAGTGCTTTCTTCCATATTTTTGCTTCAAATGAGTGGTTAGTCCTACAACTAGAAATTGTCTCTGCAGTTGTGCTTTCCTTTGCAGCACTTTGCATGGTTATGCTTCCACCTGGGACTTTTTCCCCCGGATTTATTGGCATGGCCCTCTCTTATGGTTTATTACTAAACGCTGCCTTAGTATTTTCAATTCAAAGTCAGTGCAATATAGCCAATTATATAATATCTGTTGAAAGGATAAACCAGTATATGCATATACAAAGTGAAGCTAAAGAAGTAATAGAAGGAAATCGCCCTCCTTTGAATTGGCCAGATGCAGGCATAATGGAAATACATGATCTAAAGGTAAGATATAGGCTTGATGGGCCACTTATACTTAATGGCATCACTTGCACTTTTGAAGGAGGGCACAAGATTGGTATTGTTGGCAGGACAGGTAGTGGAAAGTCAACACTGATCAGTGCTATATTTCGTCTTGTCGAGCCATCAGGTGGAAAAATTGTAGTTGATGACATAGACATCTCTTCTATTGGCCTTGATGACTTGAGGTCACGTTTGTCTATTATACCTCAGGATCCTACCCTTTTCAATGGCACTGTTAGATACAATTTGGACCCTTTATCTCAACATTCTGATCAAGACATATGGGAGGTTCTTGCCAAGTGTCAATTGAGAGAAGTGGTTCAAGAGAAGCAAGAGGGCTTAAATTCCTCAGTTGTTGGAGAGGGATCAAATTGGAGCATGGGACAAAGGCAACTATTCTGTTTGGGGCGTGCTCTTTTGAGGAGAAGCAAAATATTGGTGTTGGATGAAGCAACTGCATCAATTGATAATGCAACTGATATGATTCTGCAGAAAACCATTAGAACCGAGTTTGCAGATTGTACGGTGATCACAGTAGCTCACAGAATACCAACTGTGATGGATTGTACAATGGTTCTTTCAATTAGTGAAGGAAATTTGGTGGAATATGATGAACCTATGAGCTTGATGAAGAAAGAAGGATCACTATTCAAGCAACTTGTTAATGAATACTTCTCTCATTTTCATTCTGCAGGTCACGTTGATTCTAGCAAGTTATATTTTTAA 3285 0.3893 MSNVAKLTHSGGEIMNYVTVDAYRVGELPFWFHQTWTISIQLCIVLAIIFHTIGLATVASLVVIVLMLFCNTPLAKLQHKLQTKLMVAQDERLKASSEALVNMKVLKLYAWETHFKIVIEKLRNVELKLLSSVQLRKAYDIFLFWTAPILLTAASFWACYFLKIPLHANNVFTFLATLRLVQEPITAIPDIVGAVIQANVAFTRIVKFLQAPELQSENLWKRDFDDNIRDSILIKSADFSWEGNESSLTLRNITLEVKPGQKVAICGEVGSGKSTLLATLLGEVPKTNGTVEIYGKIAYVSQTAWIESGTIQENILFGSDLDMHRYQETLQRSSLVKDIELFPHGDITEIGERGINLSGGQKQRIQLARALYQNADVYLLDDPFSAVDANTATSLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLLMSNGKILKDAPYHQLLRSSHEFQDLVNAHKETSNSNQFVNVTSSQRQLTTAREITQTFMEKQVKETIENQLIKQEEREKGDTGLKPYLQYLNGMKGYIYYFVVSLCFTAFVICQILQNSWMAANVDNPHVSTLQLIVVYCLIAAISPIFLLIRCLATVSLGMKTSKRLFEQLMDSLFRAPMSFYDSTPLGRILSRVSSDMSILDLDIPFILGFAVGGPIYLCSYIVVLAVITWQVLVVSIPMVYIAIRLQRYFLASAKEVMRMNGTTKSSLANHVAETVAGAVTIRAFEDEDRFFEKNLDLIDANASAFFHIFASNEWLVLQLEIVSAVVLSFAALCMVMLPPGTFSPGFIGMALSYGLLLNAALVFSIQSQCNIANYIISVERINQYMHIQSEAKEVIEGNRPPLNWPDAGIMEIHDLKVRYRLDGPLILNGITCTFEGGHKIGIVGRTGSGKSTLISAIFRLVEPSGGKIVVDDIDISSIGLDDLRSRLSIIPQDPTLFNGTVRYNLDPLSQHSDQDIWEVLAKCQLREVVQEKQEGLNSSVVGEGSNWSMGQRQLFCLGRALLRRSKILVLDEATASIDNATDMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISEGNLVEYDEPMSLMKKEGSLFKQLVNEYFSHFHSAGHVDSSKLYF 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03315 1094 Pfam ABC transporter transmembrane region 535 788 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03315 1094 Pfam ABC transporter transmembrane region 8 182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03315 1094 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 197 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03315 1094 FunFam ABC transporter C family member 3 824 1076 - -
Spst4g03315 1094 CDD ABCC_MRP_domain2 839 1059 - -
Spst4g03315 1094 Gene3D ABC transporter type 1, transmembrane domain 488 823 IPR036640 GO:0005524|GO:0016020
Spst4g03315 1094 CDD ABCC_MRP_domain1 232 432 - -
Spst4g03315 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 833 1074 IPR027417 -
Spst4g03315 1094 SUPERFAMILY ABC transporter transmembrane region 514 824 IPR036640 GO:0005524|GO:0016020
Spst4g03315 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 455 IPR027417 -
Spst4g03315 1094 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1075 - -
Spst4g03315 1094 SMART AAA_5 867 1050 IPR003593 GO:0016887
Spst4g03315 1094 SMART AAA_5 259 432 IPR003593 GO:0016887
Spst4g03315 1094 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 843 1075 IPR003439 GO:0005524
Spst4g03315 1094 CDD ABC_6TM_ABCC_D2 528 816 IPR044726 GO:0140359
Spst4g03315 1094 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 234 455 IPR003439 GO:0005524
Spst4g03315 1094 Pfam ABC transporter 250 384 IPR003439 GO:0005524
Spst4g03315 1094 FunFam ABC transporter C family member 10 1 213 - -
Spst4g03315 1094 Gene3D - 208 479 IPR027417 -
Spst4g03315 1094 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 528 804 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03315 1094 Gene3D ABC transporter type 1, transmembrane domain 4 207 IPR036640 GO:0005524|GO:0016020
Spst4g03315 1094 FunFam ABC transporter C family member 10 216 468 - -
Spst4g03315 1094 Pfam ABC transporter 858 1006 IPR003439 GO:0005524
Spst4g03315 1094 Gene3D - 825 1077 IPR027417 -
Spst4g03315 1094 ProSitePatterns ABC transporters family signature. 357 371 IPR017871 GO:0005524|GO:0016887
Spst4g03315 1094 FunFam ABC transporter C family member 5 490 822 - -
Spst4g03315 1094 SUPERFAMILY ABC transporter transmembrane region 8 213 IPR036640 GO:0005524|GO:0016020
Spst4g03315 1094 CDD ABC_6TM_ABCC_D1 1 205 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03315 Spst-Chr4 73026828 73031932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03315 226 479 Calmodulin-binding Proteins AT2G36910 28.519 4.00e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03315 K05666 - gmx:100786761 1841.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03315 4 73026828 73031932 Spst4g03315 4 73026828 73031932 ECH