Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03314 ATGGATGATTTTTGGAGCACGTTTTGTGGAGAATCTGATTGTCCTGGAAATGGAGGAAAACCACCTTTCTGTTACGATTTCAAGATTTTGAAAGATCCTTCTTCGTGCACCGACCAATTCTTGATCATCTGCTTTGATGTTTTACTACTGATCATGCTAGCATTCATTTTGATGCAGAAGTTTTTTTTCAAACCATTTCGTGGTCAGTTTCAGGTGGAAAGATATTCAAACTTGCAGCTAGTTTCTGCCATAACCAATGGTTCTGTGGGGTTGTTGTATTTGTGCTTAGGAATTTGGGTTATAGAGGAGGAATTAAGGAAGAAACACACTCTTTTTCCTCTTAAGTTGTGGTTGGCAGAGCTTTTTCAAGGATTCAGATGGTTGTTAGTAGGCTTAAGTGTAAGTCTTCAGTTTAAACAACTTCCAAGGTCATGGTTGTGGTTGTTTACTCTTCTGACATTATTTGTTTCAACTATTTTCTGTGTTTTGTCCATGTATTATGCAATTAGTAGTAGAAAATTGACCTTCAAGGAATCTTTAGATATTTTGTCTTTTCCAGTGTCAGTTTTACTACTCTTGTGCACTTATAAAGTGTATAAATGTGAAGACACTGGTAGAGAAATTGATGAAGGCCTTTATGACCCTTTGAATGGTCATTTTAATGAAGTTGATCAAGATAAATATGTGACTCCATTTGCCAAAGCTGGATTCCTTAGTAAGATGACATTTTGGTGGTTGAATCCATTGATGAAGAGGGGTCAGGAGAAAACACTTCAGGATGAGGATATCCCGAAGTTGCGAGAATCAGATCGAACAGAAAGTTGCTATATGTCATTTTTAGAACAATTGAACAGGACAAAAGGAAAAGAACCATTATCACAATCATCAGTTTTGTGGACCATAGTTTTATGCCACAGGAGAGAGATTTTGATGACTGGATTGTTTGCATTGCTCAAGGTACTCACCTTGTCTACTGGTCCTGTACTTCTGAATGCTTTTGTATTGGTTTCTGAGGGCAATGAAAATTTCAAATATGAGGGTTATGTATTGGTCGTATCACTTTTCATTATAAAGGTCATCGAGTCCCTGTCACAAAGGCAGTGGTATTTCCGCAGTAGGCTTGTTGGAATGAAAGTTAGGTCACTACTCACAGCAGCCATTTATAAAAAACTATTGAGGTTATCTAGTTCAGCTAGACTGACATACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTACAGAATTGGAGAATTCCCATATTGGTTTCACCAGTCGTGGACAACAATCCTCCAAATATGTATTGCTTTAGTAATACTTTATAATGCTATTGGGATAGCAACAATATCCTCATTGGTGGTCATAGTTCTCACTGTGCTTTGCAACGCTCCACTAGGGAAGTTGCAGCATAAGTTTCAGAGCGAACTCATGGTGGCACAAGATGAACGATTGAAGGCGAGTTCTGAGGCTCTTACAAATATGAAAGTCCTGAAGCTGTATGCATGGGAAACCAGTTTTAAAAATGCTATAGAAAGACTAAGAAATTTGGAACTGAAATTGTTGCAAGCAGTGCAATTGAGAAAGGCATACAACGTATTTTTATTTTGGAGCGCACCAGTTTTGGTCTCTGCTGCTTCTTTTGCAACATGCTACTTCTTGAATATTCCTTTGCATGCAAATAATCTGTTCACATTTGTGGCAACTATACGCCTTGTGCAGGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTGGTCATTCAAGCAAAAGTGGCATTTGCCCGGATAATTAATTTCCTTGATGCACCTGAATTGCAAAGCGCAAATCTCAGGAGTAAATGTTTTGATGACAGTAAAGGGTCAATTACAATCAAATCTGCTGATTTTTCATGGGAAGGCAATGAATCAAAGTCAACACTGAGGAACATAAACCTGGAGATTAGACATGGGCAAAAGTTGGCTATTTGTGGAGAAGTTGGCTCGGGCAAATCAACTCTCTTAGCTACTATTCTTGGAGAGGTTCCTATGATAAAAGGAACTATAGAAGTTAACGGAAAGTTTGCATATGTTTCACAAACAGCATGGATACAGACAGGTACTATACGGGAAAATATTTTGTTCGGATTACATTTGGATGCTCATAGATATCAAGAAACTCTTCGAAGATCATCACTGCTGAAGGATTTGGAGCTGTTTCCCGATGGAGACCTCACAGAAATTGGTGAGAGAGGAGTTAACTTGAGTGGAGGCCAGAAACAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAACGAATACATCATGGATGGTCTTAAAGACAAAACTGTTATACTCGTTACTCATCAAGTTGACTTTCTACCAGCGTTTGATTTTGTTTTGTTGATGTCAAATGGGGAAATCCTAGAAGCTGCTCCTTATCATCATTTGTTGTCCTCAAGCCAAGAATTCCAAGATCTTGTTGATGCTCACAAGAAAACTGCTGGTTCTGACAAGCAAATGAATGTTACTTCTTCCAAGAGGCATTTAATATCTTCTAAGGAGATTACACAAGCTTTCAAGGAGAAGCAATTAAAAGCAACAAATGGAAATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACAGGGTTGAAGCCTTACTGTCAGTATTTGAATCAGATGAAAGGCTACATATTCTTCTTTGTGGCTTCTCTTTGTCACCTGTTGTTTGTCATTTGCCAGATATTGCAAAACTCGTGGATGGCTGCTAATGTTGACAACTCCCAAGTCAGCACATTGCGGTTGATTGTTGTTTACTTCTTGATTGGGGCTGCTTCTACAGTTTTTATGTTGATCAGAGTTTTTCATATAGTTGCCTTGGGTGTTCAATCATCAAAATATTTATTTTTACAGTTAATGAACTCCCTTTTTCGTGCACCGATGTCCTTTTATGACTCCACACCATTGGGAAGAATACTTAGTAGGGCCTCATCAGATCTCAGCATTATGGACATTGATATCCCATTTATGATTTCTTATACTATGGGAGGTACTACAAACTTCTATTCTAATCTCGCAGTTTTAGCCATTATCGCTTGGCAAATGTTGCTTATCGCTGTACCGATGGTATACATTGCAATACGCTTGCAGAGATACTATTTTTGCACTGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAGTCCATTGTAGCTAATCATGTAGCTGAAACTACTGCTGGAGTTGTGACAATAAGAGCCTTTGGACAAGAAGATCGTTTCTTTGAGAAGAATCTTGATCTAATTGACATCAATGCTAGTCCCTTCTTCCATAGTTTTGCCTCAAATGAGTGGCTGATCCAGAGATTAGAAATAGTTAGTGCAGTACTTCTTTCCTCCACAGCACTGTGCATGGTTATACTTCCTGAAGGGACTTTCACCTCTGGATTCGTTGGCATGGCTCTCGCTTATGGTCTTACACTAAATGCTCAACTGGTATTTTCAATTCAAAGTCAATGCAGTCTAGCAAATTACATAATTTCTGTTGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCCCCAGAAGTAATTGAAGGAAGTCGTCCTCCTTCGAATTGGCCAGTCTCTGGTGAAGTAGAACTGAATGATTTGCAGGTACGATACAGGCCTGAGGGACCACTTATACTCCATGGAATCACGTGCACATTCAAAGCAGGGCACAAGATTGGAATTGTTGGAAGGACAGGCAGTGGGAAGTCCACTCTGATCAGTGCATTATTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCTATTGGCCTACATGATTTGAGGTCGCGTTTTGGTGTTATACCTCAAGATCCTACTCTTTTTAATGGGACTGTCAGATATAATTTGGACCCTTTATCACAATACTCTGATCACGAGATATGGGAGGTTCTTGGCAAGTGTCAGTTGCGAGAAGTTGTCCAACAGAAATTAGAGGGCCTGAACTGCCCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGACAATTATTTTGTTTGGGGCGTGCACTTTTAAAGAGAAGTAGGATATTGGTGCTGGATGAAGCAACTGCATCGATTGACAATGCAACCGATTTGATTCTACAGAAAACAATTCGGACTGAGTTTGCAGATTGCACTGTGATTACAGTAGCACACAGGATACCAACTGTGATGGATTGCACCATGGTCCTTTCAATCAGTGATGGAAGACTGGTGGAGTATGATGAACCAACGAGTTTGATGACGAAAGAAGGATCGCTATTCAAGCAACTTGTGAAGGAGTACTGGTCTCATTTTCAATCTGCAGAATCACAATGA 4440 0.3957 MDDFWSTFCGESDCPGNGGKPPFCYDFKILKDPSSCTDQFLIICFDVLLLIMLAFILMQKFFFKPFRGQFQVERYSNLQLVSAITNGSVGLLYLCLGIWVIEEELRKKHTLFPLKLWLAELFQGFRWLLVGLSVSLQFKQLPRSWLWLFTLLTLFVSTIFCVLSMYYAISSRKLTFKESLDILSFPVSVLLLLCTYKVYKCEDTGREIDEGLYDPLNGHFNEVDQDKYVTPFAKAGFLSKMTFWWLNPLMKRGQEKTLQDEDIPKLRESDRTESCYMSFLEQLNRTKGKEPLSQSSVLWTIVLCHRREILMTGLFALLKVLTLSTGPVLLNAFVLVSEGNENFKYEGYVLVVSLFIIKVIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSSSARLTYSGGEIMNYVTVDAYRIGEFPYWFHQSWTTILQICIALVILYNAIGIATISSLVVIVLTVLCNAPLGKLQHKFQSELMVAQDERLKASSEALTNMKVLKLYAWETSFKNAIERLRNLELKLLQAVQLRKAYNVFLFWSAPVLVSAASFATCYFLNIPLHANNLFTFVATIRLVQEPITAIPDVIGVVIQAKVAFARIINFLDAPELQSANLRSKCFDDSKGSITIKSADFSWEGNESKSTLRNINLEIRHGQKLAICGEVGSGKSTLLATILGEVPMIKGTIEVNGKFAYVSQTAWIQTGTIRENILFGLHLDAHRYQETLRRSSLLKDLELFPDGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKDKTVILVTHQVDFLPAFDFVLLMSNGEILEAAPYHHLLSSSQEFQDLVDAHKKTAGSDKQMNVTSSKRHLISSKEITQAFKEKQLKATNGNQLIKEEEREIGDTGLKPYCQYLNQMKGYIFFFVASLCHLLFVICQILQNSWMAANVDNSQVSTLRLIVVYFLIGAASTVFMLIRVFHIVALGVQSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRASSDLSIMDIDIPFMISYTMGGTTNFYSNLAVLAIIAWQMLLIAVPMVYIAIRLQRYYFCTAKEVMRMNGTTKSIVANHVAETTAGVVTIRAFGQEDRFFEKNLDLIDINASPFFHSFASNEWLIQRLEIVSAVLLSSTALCMVILPEGTFTSGFVGMALAYGLTLNAQLVFSIQSQCSLANYIISVERLNQYMHIPSEAPEVIEGSRPPSNWPVSGEVELNDLQVRYRPEGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQYSDHEIWEVLGKCQLREVVQQKLEGLNCPVVEDGSNWSMGQRQLFCLGRALLKRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGRLVEYDEPTSLMTKEGSLFKQLVKEYWSHFQSAESQ 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03314 1479 Gene3D - 600 871 IPR027417 -
Spst4g03314 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Spst4g03314 1479 SMART AAA_5 651 824 IPR003593 GO:0016887
Spst4g03314 1479 SMART AAA_5 1259 1451 IPR003593 GO:0016887
Spst4g03314 1479 FunFam ABC transporter C family member 10 608 860 - -
Spst4g03314 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Spst4g03314 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1467 - -
Spst4g03314 1479 SUPERFAMILY ABC transporter transmembrane region 298 606 IPR036640 GO:0005524|GO:0016020
Spst4g03314 1479 CDD ABCC_MRP_domain1 624 824 - -
Spst4g03314 1479 SUPERFAMILY ABC transporter transmembrane region 917 1213 IPR036640 GO:0005524|GO:0016020
Spst4g03314 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Spst4g03314 1479 FunFam ABC transporter C family member 3 1216 1468 - -
Spst4g03314 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Spst4g03314 1479 Pfam ABC transporter transmembrane region 310 575 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03314 1479 Pfam ABC transporter transmembrane region 917 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03314 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524|GO:0016887
Spst4g03314 1479 FunFam ABC transporter C family member 5 882 1214 - -
Spst4g03314 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1465 IPR027417 -
Spst4g03314 1479 CDD ABC_6TM_ABCC_D1 312 598 IPR044746 GO:0140359
Spst4g03314 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Spst4g03314 1479 Gene3D - 1217 1468 IPR027417 -
Spst4g03314 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 846 IPR027417 -
Spst4g03314 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 310 590 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03314 1479 Gene3D ABC transporter type 1, transmembrane domain 880 1214 IPR036640 GO:0005524|GO:0016020
Spst4g03314 1479 Gene3D ABC transporter type 1, transmembrane domain 297 599 IPR036640 GO:0005524|GO:0016020
Spst4g03314 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03314 1479 Coils Coil 508 528 - -
Spst4g03314 1479 FunFam ABC transporter C family member 10 293 606 - -
Spst4g03314 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03314 Spst-Chr4 73018787 73024762 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03314 597 875 Calmodulin-binding Proteins AT2G36910 28.667 4.06e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03314 K05666 - gmx:100787314 2606.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03314 4 73018787 73024762 Spst4g03314 4 73018787 73024762 ECH