Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03311 ATGGCTCCACAAAGCTCTATAAGGATTCTTAACCAAAAGCCATTTAGGAGTTTAAGGGCAAACTACAAAGAAGATGGAAGACTTTTGGAGCATGGTTTGTGGGGATTCTGTTGGTGCAAAGACTGTGGGAAAGCTTTCGTGTTACGATTTCAAGCTTTTGAAAGATCCTTCCTATGTAAACATGAAGACACTAACAGAGAAGCTAGAGAAGGCCTTTATGCCCCTTTAAGAGACCAGTTCAATGGAGTTGATCCTAATAGATATGTAACCCCATTTGCAAATGCTGGATTCATTAGCAGGATATTGTTTTGGTGGTTGAATCCACTTATGAAAAAGGGTGAAGAGAAAACACTCGAGGATGAGGATATCCCAAAGTTGGCAGAGTTGGATGGAGCAGAAAGTTGTTATACATTGTTTGAAGAACATTTGAACAAACAGATAGAAAAAGATCCATCGTCACCTGTGTCAATTTTGTGGATAATAATTTTTTGCCATCAAAAAGAGATTTGGATATCAGGATTCTTTGCATTGCTGAAGGTACTGACTGTGTCTTCTGGTCCTGTACTTCTAAATGCCTTTCTTCTGGTTGCTGAGGGTAATGAAAGTTTTAAGTATGAGGGTTATGTATTGGTCATATCACTTTTCATTATAAAGATCGTAGAGTCCCTATCACAAAGGCAGTGGTACTTCCGCAGTAGACTTGTTGGGATGAAAGTTAGGTCACTGCTTACTGCAGCCATTTATAAAAAATTGTTGAGGTTGTCCAATGTTGGAAGATTGGCACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCCTATAGAATTGGAGAATTTCCATTCTGGTTTCACCAAACATGGACTACAAGTGTCCAACTATGTATTGCATTAGTAATACTTTTTCGTGCCATTGGGATGGCAACAATCGCTTCATTGGTGGTGATAGTTCTCACTGTGTTGTGCAATACTCCAATATCTAAATTACAACACAAGTTTCATGGTGAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTACTTCTGAAGCTCTTGTGAATATGAAAGTTTTAAAGCTATATGCATGGGAAAATCACTTTAAAAATGCTATAGAAAAGTTAAGAAACATGGAACTCAAGTTGTTAGCTGCAGTGCAACTAAGAAAGGCATACAACGTATTTATTTTTTGGTCTTCGCCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGTATGTTACTTCCTTAAAGTTCCTTTGCATGCAAATAATGTTTTCACATTTGTGGCAGCTTTACGGATTGTGCAAGAGCCAATTACAACTATTCCCGATGTAATCGGGGTGGTCATTCAAGCAAAGGTTGCATTCACTCGAATTATTAAGTTCCTTGAGGCACAAGAATTACAAACTAAAAGTTTTAGGAAAGAGAGCTTTGTTAACAATCTGAATGATTCAATTTTGGTCAAACATGCCGATATTTCATGGGAAGATAATGTATCAAAGCCAACATTGAGGAACATAAATTTGGAGATTAAACATGGACAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTATCATCGATTCTTGGAGAAGTTTCTATTACAAAAGGAACAATATACGTTTATGGGAAGTTCGCTTATGTTTCTCAAACGGCATGGATACAAACAGATACTGTACGGGAAAATATTTTGTTTGGATCTGATATGGATGATGAAAGATATCAAGAAACACTTCAAAGATCTTCCCTAGTGAAGGACCTGGAGTTGTTTCCCAACGGTGACCTAACAGAAATAGGTGAGAGAGGAGTTAACCTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTCTCTATCAGAATGCTGATATATATCTTCTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGACTACATCATGGAAGGACTTAAAGAGAAAACTGTCTTACTAGTAACTCATCAAGTTGACTTCCACCCAGCATTTGATTCTGTTTTGTTAATGTCAAATGGGGAAATCCTTGAAGCTGCTCCTTATCATCATCTATTGAGCTCAAGCAAAGAATTCCAGAACCTCGTCAATGCTCACAAGGAGACGGCTGGTTCTAACAAGCTTGTGAATGTTACTTTTGTCAAGAGACATCCAACTTCTGATGGAGAGACTACACAAGCTTGCATGAAGAAGCAATTCAACGTAGCAGAAACAAATAAATTAATAAAGCAAGAAGAAAGAGAGATAGGAGACACTGGATTGAAGCCTTACATGCAATATCTGAATCAAAAGAAATGCTATATATTCTTCTCTGTGGCTGCTCTTTGTCACCTTACATTTGCAATTTTGCAAGTATCGCAAAACTCATGGATGGCTACGAATGTTGATAATCCTCGTGTCAGCACGTTGCGGTTAATTTTAATGAACACACTTTTTCGTGCACCAATGTCATTTTATGACTCTACACCAGTAGGAAGGATACTTAGCAGGGTCTCATCAGATCTTAGCATTCTGGATCTTGACATTCCATTTAGCCTCACTTTTGCTATGGCAGTAACCATAAATACTTATATAACGCTTACAGTTTTAGCAGTTGTCACTTGGCCAGTCTTGGTTATCTCAATACCACTAGTTTATATAGCAATTCGCTTGCAGAGATACTACTTTGCCTCTGCTAAAGAAGTAATGCGGATGAATGGCACAACAAAATCCTTTATAGCTAATCATATTGCTGAAACTGTTGCTGGAGTTGTGACCATAAGGGCTTTTGAGGAGGAATATCGTTATTTTGCAAAGAATCTTGATTTAATTGACATCAATGCTACTCCTTTCTTCCATAGTTTTGCTTCAAATGAGTGGTTGATCCTACGTTTAGAAATTGTAGCTGCAGTTGTTCTTACCTTCGCAGCACTTTGCATGGTCTTGTTTCCACCTGGGACTTTTACATCTGGTGAGATTCGTGAGGCTGAAGAAGTAATAGAAACAAAACGCCCTCCATGTAATTGGCCAGATGAAGGTGAAGTAGAAATAAGTGACTTGCAGGTACGATACAGGCCTGATGGACCACTTATACTCCATGGAATTACATGCACATTCAAAGCAGGGCACAAGATTGGAATTGTTGGAAGGACAGGCGGTGGCAAGTCCACTCTTATTGGTGCTTTATTTCGTCTTGTGGAGCCAGCAGGTGGAAGAATTATTGTTGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGATCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGGACTGTTAGATACAATTTGGACCCTCTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGAGAAAGAAGAGAGCTTGGACTCCTCTGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAGCTATTTTGTTTGGGGCGTGCTATTTTGAGAAGTAGTAAGATATTGGTGCTGGATGAAGCTACAGCTTCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAATTTTCTAATTGTACAGTGATAACAGTAGCACACAGAATACCAACAGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGTAGAGTATGATGAACCAAATACCTTGATGAAGAGAGAAGGGTCGTTGTTCAGACAACTAGTCCAAGAATATTGGTCTCATTTTCAGTCTTCAGAATCCCATTGA 3795 0.391 MAPQSSIRILNQKPFRSLRANYKEDGRLLEHGLWGFCWCKDCGKAFVLRFQAFERSFLCKHEDTNREAREGLYAPLRDQFNGVDPNRYVTPFANAGFISRILFWWLNPLMKKGEEKTLEDEDIPKLAELDGAESCYTLFEEHLNKQIEKDPSSPVSILWIIIFCHQKEIWISGFFALLKVLTVSSGPVLLNAFLLVAEGNESFKYEGYVLVISLFIIKIVESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSNVGRLAHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALVILFRAIGMATIASLVVIVLTVLCNTPISKLQHKFHGELMVAQDERLKATSEALVNMKVLKLYAWENHFKNAIEKLRNMELKLLAAVQLRKAYNVFIFWSSPVLVSAASFGVCYFLKVPLHANNVFTFVAALRIVQEPITTIPDVIGVVIQAKVAFTRIIKFLEAQELQTKSFRKESFVNNLNDSILVKHADISWEDNVSKPTLRNINLEIKHGQKVAICGEVGSGKSTLLSSILGEVSITKGTIYVYGKFAYVSQTAWIQTDTVRENILFGSDMDDERYQETLQRSSLVKDLELFPNGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNDYIMEGLKEKTVLLVTHQVDFHPAFDSVLLMSNGEILEAAPYHHLLSSSKEFQNLVNAHKETAGSNKLVNVTFVKRHPTSDGETTQACMKKQFNVAETNKLIKQEEREIGDTGLKPYMQYLNQKKCYIFFSVAALCHLTFAILQVSQNSWMATNVDNPRVSTLRLILMNTLFRAPMSFYDSTPVGRILSRVSSDLSILDLDIPFSLTFAMAVTINTYITLTVLAVVTWPVLVISIPLVYIAIRLQRYYFASAKEVMRMNGTTKSFIANHIAETVAGVVTIRAFEEEYRYFAKNLDLIDINATPFFHSFASNEWLILRLEIVAAVVLTFAALCMVLFPPGTFTSGEIREAEEVIETKRPPCNWPDEGEVEISDLQVRYRPDGPLILHGITCTFKAGHKIGIVGRTGGGKSTLIGALFRLVEPAGGRIIVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLREVVQEKEESLDSSVVEDGSNWSMGQRQLFCLGRAILRSSKILVLDEATASIDNATDLILQKTIRTEFSNCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPNTLMKREGSLFRQLVQEYWSHFQSSESH 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03311 1264 Pfam ABC transporter 503 637 IPR003439 GO:0005524
Spst4g03311 1264 SUPERFAMILY ABC transporter transmembrane region 781 986 IPR036640 GO:0005524|GO:0016020
Spst4g03311 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 487 708 IPR003439 GO:0005524
Spst4g03311 1264 SUPERFAMILY ABC transporter transmembrane region 158 458 IPR036640 GO:0005524|GO:0016020
Spst4g03311 1264 CDD ABCC_MRP_domain2 1016 1236 - -
Spst4g03311 1264 SMART AAA_5 1044 1236 IPR003593 GO:0016887
Spst4g03311 1264 SMART AAA_5 512 685 IPR003593 GO:0016887
Spst4g03311 1264 Pfam ABC transporter 1035 1183 IPR003439 GO:0005524
Spst4g03311 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1251 IPR027417 -
Spst4g03311 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 810 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03311 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1018 1252 IPR003439 GO:0005524
Spst4g03311 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 708 IPR027417 -
Spst4g03311 1264 Gene3D - 1001 1254 IPR027417 -
Spst4g03311 1264 ProSitePatterns ABC transporters family signature. 610 624 IPR017871 GO:0005524|GO:0016887
Spst4g03311 1264 FunFam ABC transporter C family member 10 468 721 - -
Spst4g03311 1264 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 93 805 - -
Spst4g03311 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 170 450 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03311 1264 Gene3D ABC transporter type 1, transmembrane domain 139 466 IPR036640 GO:0005524|GO:0016020
Spst4g03311 1264 Gene3D ABC transporter type 1, transmembrane domain 742 996 IPR036640 GO:0005524|GO:0016020
Spst4g03311 1264 FunFam ABC transporter C family member 3 1001 1253 - -
Spst4g03311 1264 Gene3D - 480 714 IPR027417 -
Spst4g03311 1264 CDD ABCC_MRP_domain1 485 685 - -
Spst4g03311 1264 CDD ABC_6TM_ABCC_D2 817 996 IPR044726 GO:0140359
Spst4g03311 1264 FunFam ABC transporter C family member 10 153 466 - -
Spst4g03311 1264 CDD ABC_6TM_ABCC_D1 171 458 IPR044746 GO:0140359
Spst4g03311 1264 Pfam ABC transporter transmembrane region 170 436 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g03311 1264 Pfam ABC transporter transmembrane region 771 995 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03311 Spst-Chr4 72956819 72964919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03311 487 716 Calmodulin-binding Proteins AT2G36910 29.719 1.63e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03311 K05666 - gmx:100787314 1887.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03311 4 72956819 72964919 Spst4g03311 4 72956819 72964919 ECH