Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03306 ATGGTAATGGGGCATGAGGGAAAGGTGATTCCTCTAGGCCATGTAGATGGGGATGCAATTAGATTGGTTACTGCTTCAAAGATTTGGATTGATCACAATACATTTTACAGTTGTCAAGATGGTTTGCTTGATGTAACTCGAGGTTCCACTTATTTGATTATATCTAATAATTGGTTCAAAAATCAAGATAAGGTTATGCTTCTTGGACTTGATGATGGATATGTGAGAGATCAAAACATGAAGGTTACTGTTGTGTATAATCATTTTGGACCAAATTGCAATCAACGCATGCCAAGGTGTGGAATAAAAAGGCATTCATTCATCTCTTCTGAAGGATCCCAGAACACATTTTGTAATGGGGAAAGTAGAAAGACTAGCAGAGCTTGGTTAGTGGTTTGGGTTGCAGTTATTGCTTGGTCACTGAATGAGGTAATTTTCAAAGATGCACCGATTGATCTTGAGGAAGTTTTGGAATTGGCTAAGGTCATGTTGGGGCTTAGATTACTGCTATGGTGA 516 0.3857 MVMGHEGKVIPLGHVDGDAIRLVTASKIWIDHNTFYSCQDGLLDVTRGSTYLIISNNWFKNQDKVMLLGLDDGYVRDQNMKVTVVYNHFGPNCNQRMPRCGIKRHSFISSEGSQNTFCNGESRKTSRAWLVVWVAVIAWSLNEVIFKDAPIDLEEVLELAKVMLGLRLLLW 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03306 171 PANTHER PECTATE LYASE 18-RELATED 1 102 IPR045032 GO:0030570
Spst4g03306 171 SUPERFAMILY Pectin lyase-like 13 119 IPR011050 -
Spst4g03306 171 Gene3D - 5 107 IPR012334 -
Spst4g03306 171 Pfam Pectate lyase 11 100 IPR002022 -
Spst4g03306 171 SMART amb_all 2 123 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03306 Spst-Chr4 72921967 72924581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03306 2 107 Polysaccharide Lyase AT5G09280 72.642 3.75e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03306 K01728 - gmx:100780437 191.43