Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03294 ATGACTTTTGAACTTCCTCAAATATGCTATAGGTACAAGATGATGAAGAAAGTTCTTAGACATGTGAGCATTTTCTTCCCCTTCTTGGTCAGATACACAAATGTTTTCCACGTTATATATGAATCAAAAAGCACTTATGAACGGTATGTATTTAATCAGTTTGTTTGGTTCTGTGCTGCTTCACACCCCTTTGCTGTTTTGCTAAGTAAAGCTTTGGTGGTCAAAAGGGAGAGTGGAAAAGCAAAAGGGAGAAGTGAGCCAAGCCAATATGTGCACTTTCCATATTCTGAAAGTGATGATCTCCAAACGAAACGTGGTTTTGTTTGGTCTCATCAATTTGACCCTAACGATGTCAAGTGTAGCCGCCTTTTGAATGTGTCGTGTCTTTTGGCTGCTTTTGTGGTGGCACGCACTGCCGCACCTCACTCTTCGCTGACAAAACTTGGATTCAGGGTCGTGATGGAACAGAAGCACGTTCTGTTGTCAGCATTGAGTGTTGGGGTTGGATTGGGTGTGGGGCTTGGGTTGAGTTCAGGGCAGAAATGGGTTGGCGGGAATCGCGACTCTGATGAGCTTTCTGTGGAGCAGATTGTTCAGGAGCTCAAAAAGTTGGTGGTTGAAGGAAAGGACAGCAAGTATACATTTGAGGACTTTCCATATTACTTAAGTGAAAGAATTCGAATTTTGTTGACAAGTGCCGCATATGTTCATTTAAAACATCTTCACTTTTCCAAGCACACCAGAAACCTCTCACCAGCAAGCAGGGCAATTTTGCTATCTGGTCCAGCAGAATCTTACCAGCAAGCCCTTGCTAGAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGATAGATATTACTGACTTCTCTGTGAAGTCTTTGAGAAGGTCAATATCCGAGGCAACGTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAAGGCTTTCTTTAGCAGGAGAAACAAGAGGTTTTGTTTTTAAAGTTAGTATCACCGACAGTGTTCACAGCCCTGACATTGGAAATAGTTGTGGAGACTCCATATTATCTCTTCTCCTTTTTCCAAATTTCGTTTCAGCTGATATTTCCAATCCTCCAAAGCTTAGGAGGAATGCTTCTGCTGCATCTGATATAAGTAGCACTGCTTCCCAGTGTGGTCCAACATTTCCAGCTCGTTTAAAGCGCTCAAGTAACTTGTGTTTTGATGAGAAGCTCTTTGTGCAGGCACTTTACAAGCTCTTGGTTTCTATCACAGAAACTAGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTCGTTCTCCAGTCATCAAGGTTATATAATTTACTACAAAAAATGATAAAGAAAATATCAGGTTCGGTGTTGATACTTGGTTCCCAGATATTAGATTCAGATGATGATTGCAAAGAAGTTGATGAAAGGATCACTGCGCTATTCCCCTACAATATTGAAATCAAAGCTCCTGAAGATGAAGCTCATTCTGGCAATTGGAAAGGCTCACTGGAAGAGGATATGAAAGCTATTCATTTCCAAGATAACAGAAACCACATTGCTGAAGTACTAGCAGAAAATGACATTGACTGTGATGACTTGAACTCAATCTGCCATGCAGATACAATCGTACTCAGCAATTATATTGAAGAAATTGTAGTATCTGCAATATCTTACCATTTGATGAATACCAAGGATCCAGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATATGAAGACTAATGAATCTAACAAGGAAAATGCCGGCGAAGATATTACTGGTGCAAAGAATGAAGTAAAGTGTGACAATCAAGCACCGGAAAACAAAAGTGAGACAGAGAAATCCATCCCAGTAACAAAGAAAGATGGCGAAAATACTACACCTGCAAAAGCAGAGGTTCCTGACAATGAGTTTGAGAAGCGCATAAGACCCGAAGTTATCCCTGCAAATGAGATAGGGGTAACATTTGCGGATATTGGTGCATTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCTGACCTCTTCAAAGGTGGGCTTCTAAAGCCATGTAGAGGTATATTGCTTTTCGGGCCTCCTGGTACTGGGAAAACAATGCTAGCAAAAGCAATTGCAAATGAAGCTGGTGCCAGTTTCATTAATGTCTCAATGTCCACCATTACATCAAAATGGTTTGGAGAAGATGAAAAGAATGTCAGAGCTCTATTCACACTGGCAGCTAAGGTTGCTCCAACAATTATCTTTGTTGACGAGGTTGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCCATGAGGAAGATAAAAAATGAGTTCATGACACACTGGGATGGACTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGCAGGGTCCTGGTTGGTCTTCCATCTGCTGAGAACAGGGAAATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATTTACTGGAAGTGATCTTAAGAATTTGTGCATCACTGCCGCTTATCGACCTGTTAGAGAGCTAATAAAGGGGGAGAGAATGAAGGAAATGGAAAAGAAGAAAAGAGAGGCAGAAGGCCAAAACTCTGAAGATGCTTCAAACAATAAAGATAAGGAAGACCAAGAAATTACCCTCAGGCCTTTAAATATGGAAGACATGAAACAGGCTAAGAGTCAGGTGGCTGCAAGTTTTGCCTCAGAAGGATCCGTCATGAATGAGTTGAAGCAGTGGAATGATTTGTACGGAGAAGGAGGTTCGAGGAAGAAGCAACAGCTCACTTACTTCTTTTAG 2958 0.4148 MTFELPQICYRYKMMKKVLRHVSIFFPFLVRYTNVFHVIYESKSTYERYVFNQFVWFCAASHPFAVLLSKALVVKRESGKAKGRSEPSQYVHFPYSESDDLQTKRGFVWSHQFDPNDVKCSRLLNVSCLLAAFVVARTAAPHSSLTKLGFRVVMEQKHVLLSALSVGVGLGVGLGLSSGQKWVGGNRDSDELSVEQIVQELKKLVVEGKDSKYTFEDFPYYLSERIRILLTSAAYVHLKHLHFSKHTRNLSPASRAILLSGPAESYQQALARALAHYFESKLLLIDITDFSVKSLRRSISEATLERMSGLFGSFSRLSLAGETRGFVFKVSITDSVHSPDIGNSCGDSILSLLLFPNFVSADISNPPKLRRNASAASDISSTASQCGPTFPARLKRSSNLCFDEKLFVQALYKLLVSITETSSIILYIRDVEKLVLQSSRLYNLLQKMIKKISGSVLILGSQILDSDDDCKEVDERITALFPYNIEIKAPEDEAHSGNWKGSLEEDMKAIHFQDNRNHIAEVLAENDIDCDDLNSICHADTIVLSNYIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNMKTNESNKENAGEDITGAKNEVKCDNQAPENKSETEKSIPVTKKDGENTTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRVLVGLPSAENREMILKTLLAKEKHENLDFKELATMTEGFTGSDLKNLCITAAYRPVRELIKGERMKEMEKKKREAEGQNSEDASNNKDKEDQEITLRPLNMEDMKQAKSQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFF 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03294 985 MobiDBLite consensus disorder prediction 586 601 - -
Spst4g03294 985 MobiDBLite consensus disorder prediction 602 652 - -
Spst4g03294 985 Coils Coil 903 923 - -
Spst4g03294 985 MobiDBLite consensus disorder prediction 905 931 - -
Spst4g03294 985 Gene3D - 671 953 IPR027417 -
Spst4g03294 985 Pfam AAA+ lid domain 864 907 IPR041569 -
Spst4g03294 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 891 IPR027417 -
Spst4g03294 985 Gene3D - 844 947 - -
Spst4g03294 985 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 671 846 - -
Spst4g03294 985 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 197 984 - -
Spst4g03294 985 ProSitePatterns AAA-protein family signature. 815 834 IPR003960 GO:0005524|GO:0016887
Spst4g03294 985 SMART AAA_5 708 845 IPR003593 GO:0016887
Spst4g03294 985 MobiDBLite consensus disorder prediction 586 652 - -
Spst4g03294 985 Pfam ATPase family associated with various cellular activities (AAA) 712 842 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03294 Spst-Chr4 72668782 72688802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03294 638 903 Calmodulin-binding Proteins AT3G56690 37.091 2.17e-41 163