Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03285 ATGGCTTCCGATCTTGAAGCGAAAGCAAAAGAGGCCTTCGTTGAAGACCACTTCGAACTCGCCGCGGACCTTCTCTCTCAGGCCATTCAACTCGAACCCAACAAAGCTGAACTCTACGCCGACCGCGCCCAAGCCAACATCAAATTGAACCACTTCACTGAGGCTGTTGCCGATGCTAACAAAGCAATTGAATTGAATCCTTCTCTGCCAAAAGCATATTTGCGGAAAGGTACTGCATGCATGAAGCTTGAGGAATATCAGACTGCCAAGGCTGCTCTGGAGATGGGTGCTTCATTGTCTCCAGACAACTCAAGATTTGCTATTTTAATCAAAGAGTGTGACGAGCTTATTGCAGAAGAATCTTATACCACCATACCTATACAGGAAAAGGCCACAGCACAAGAGGTTAATCCAAAAGATTTTCAGCAACAGGATGATCTTCCAGAGAAGCCAACAGTTGCAGTCACTAAACCTAAATATAGCTTAGTGTTAGTATTAATGTCCCAGGAGAAGATGCGTATGTTTTTCAAACTCGCTTATTTGGAAAGGTATGAGCAAGAGCGTTTTGTCAGCATAAAAGCTTGGATTACTATTGCACCCTCCAATTGCCGGTATGAAGTTTTGGCCACCAAAATTGAAATTCGCCTTGAGAAAGCAGAACCTATTCATTGGACATCTCTTGAATTCACCAGAAACGTCGTAGTTCCACAGAGGGTTAATGCCTCTTCAGTGCTTTCAAGTGCAAAGGAGTATTGGGTTTGTCCTGGATCTGATGGGCATATGCAAGGAATTGTGCTTGCAGTTGTTACTGCAAGTCAAAGACCTTCTTACCCTTCCTCAAAACAAACAAGAGATTGGGACAAGATTGAAGCTCAAGTCAAGAAAGAGGAGAAAGATGAAAAGCTTGATGGCGATGCTGCATTGAACAAATTTTTCCGGGAAATATATCAAGATGCAGATGAGGATACAAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCTAATGGAACAGTGCTGTCTACAAACTGGAAAGAAGTGGGATCAAGGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAA 1101 0.4305 MASDLEAKAKEAFVEDHFELAADLLSQAIQLEPNKAELYADRAQANIKLNHFTEAVADANKAIELNPSLPKAYLRKGTACMKLEEYQTAKAALEMGASLSPDNSRFAILIKECDELIAEESYTTIPIQEKATAQEVNPKDFQQQDDLPEKPTVAVTKPKYSLVLVLMSQEKMRMFFKLAYLERYEQERFVSIKAWITIAPSNCRYEVLATKIEIRLEKAEPIHWTSLEFTRNVVVPQRVNASSVLSSAKEYWVCPGSDGHMQGIVLAVVTASQRPSYPSSKQTRDWDKIEAQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSRKVEGSPPDGMELKKWEY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03285 366 MobiDBLite consensus disorder prediction 347 366 - -
Spst4g03285 366 ProSiteProfiles SGS domain profile. 276 366 IPR007699 -
Spst4g03285 366 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Spst4g03285 366 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Spst4g03285 366 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Spst4g03285 366 SUPERFAMILY HSP20-like chaperones 184 344 IPR008978 -
Spst4g03285 366 Gene3D Tetratricopeptide repeat domain 1 134 IPR011990 GO:0005515
Spst4g03285 366 Pfam SGS domain 284 364 IPR007699 -
Spst4g03285 366 SMART tpr_5 70 103 IPR019734 GO:0005515
Spst4g03285 366 SMART tpr_5 2 35 IPR019734 GO:0005515
Spst4g03285 366 SMART tpr_5 36 69 IPR019734 GO:0005515
Spst4g03285 366 SUPERFAMILY TPR-like 6 119 IPR011990 GO:0005515
Spst4g03285 366 Gene3D - 135 228 IPR008978 -
Spst4g03285 366 PANTHER PROTEIN SGT1 HOMOLOG 1 364 IPR044563 GO:0051087
Spst4g03285 366 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Spst4g03285 366 FunFam Protein SGT1 homolog 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03285 Spst-Chr4 72571350 72576063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03285 1 101 U-box Gene Family AT3G07370 28.571 5.83e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03285 K12795 - gmx:100194421 514.998