Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03255 ATGCGGTTAAAATGGACACAGTGTTTTCAATCAGCGGATGTGATAACTTGTATCGATCAAGAATCAGAGATGTGGATTTGGAAAGGAAAGCAGAAGAAGGAGGAGGAGGAAGAGGGGGGGTACGAATGTGAGAAATGTGGGAGAAAGTTCAACACGAAACATGGTGTAAAGATTCACAAGAGCATCCATGATTTTCCTCCTAATCACTTCAAATGTGATTATCCTAACTGTGGTCGATCTTTTGATTCTAAATCGCTCTTATCTGCTCACAAGAAGAACCATCGTCGTGCTCCTCATGACTTTGATCTCAACAAACCACCCAAGTACCAGTGA 333 0.4204 MRLKWTQCFQSADVITCIDQESEMWIWKGKQKKEEEEEGGYECEKCGRKFNTKHGVKIHKSIHDFPPNHFKCDYPNCGRSFDSKSLLSAHKKNHRRAPHDFDLNKPPKYQ 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03255 110 SUPERFAMILY beta-beta-alpha zinc fingers 41 94 IPR036236 -
Spst4g03255 110 ProSitePatterns Zinc finger C2H2 type domain signature. 72 94 IPR013087 -
Spst4g03255 110 MobiDBLite consensus disorder prediction 95 110 - -
Spst4g03255 110 Gene3D Classic Zinc Finger 18 69 - -
Spst4g03255 110 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 63 IPR013087 -
Spst4g03255 110 MobiDBLite consensus disorder prediction 88 110 - -
Spst4g03255 110 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 94 IPR013087 -
Spst4g03255 110 Gene3D Classic Zinc Finger 71 96 - -
Spst4g03255 110 Pfam Zinc finger, C2H2 type 70 94 IPR013087 -
Spst4g03255 110 Pfam Zinc finger, C2H2 type 41 63 IPR013087 -
Spst4g03255 110 SMART c2h2final6 70 94 IPR013087 -
Spst4g03255 110 SMART c2h2final6 41 63 IPR013087 -
Spst4g03255 110 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g03255 zf-C2H2 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03255 - K09228 mjv:108408239 58.5362