Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03254 ATGGTATCCAAGAACCCGAACCCGCCCGAGGGATTCTATTTGGATCCGACTGGCATGGCTCTCCCGGGGATGCCTCCCTTCGCCTCTGCCGCCGCGGCGGTCACCGTCTCTGCCTCTAACTCCTCAGAGGACGCAGCCAAGAAGATCCGCAAGCCCTACACTATCACCAAGTCACGGGAGAACTGGACCGAACCCGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACTGTTATACAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAAAGTGGAGCAAGTGAACATCTTCCGCCACCCAGGCCTAAAAGAAAAGCTGCACATCCATATCCTCAAAAAGCTTCCAAAAATGCTCCTGTACTCCCACAAGTATCAGGATCTTTTCAATCATCATCTGCTTTGCTTGAACCTGGATATATCCTGAAGAATGACTCCCCTGCGATGCTTAAACTTCCTGTGAACACTGTGGTGTCGTCCTGGTCAAACAACACCTTGCAAACTGTCAATTTATCCCCTGTGACAAAAGTGAATAATCCTTGCAGTAGTGGTGAAAGCACTCCTAAAGTGCGCCCACTAGGTGAATCTAATGGTCAAGGACCTCAAGGGAATAAAATCCATCCATTGAGAGTTCTTCCAGATTTTAATCAGGTATACGGTTTCATTGGCAGTGTATTTGATCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGTATAGATGTTGAGACAGTGCTACTGTTAATGAGAAACCTGTCTATCAATTTAACTAGCCCAGATTTTGAGGATCATAGGAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAAAAAACTATCAATGTGGATAG 915 0.4557 MVSKNPNPPEGFYLDPTGMALPGMPPFASAAAAVTVSASNSSEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLPPPRPKRKAAHPYPQKASKNAPVLPQVSGSFQSSSALLEPGYILKNDSPAMLKLPVNTVVSSWSNNTLQTVNLSPVTKVNNPCSSGESTPKVRPLGESNGQGPQGNKIHPLRVLPDFNQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEVEPERKNYQCG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03254 304 CDD SANT 61 104 IPR001005 -
Spst4g03254 304 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Spst4g03254 304 Gene3D - 61 109 - -
Spst4g03254 304 MobiDBLite consensus disorder prediction 195 224 - -
Spst4g03254 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Spst4g03254 304 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Spst4g03254 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Spst4g03254 304 PANTHER SWI/SNF COMPLEX-RELATED 33 278 - -
Spst4g03254 304 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Spst4g03254 304 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Spst4g03254 304 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
Spst4g03254 304 MobiDBLite consensus disorder prediction 110 142 - -
Spst4g03254 304 SMART sant 58 106 IPR001005 -
Spst4g03254 304 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03254 Spst-Chr4 72254456 72260800 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst4g03254 Myb_DNA-binding 3.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03254 - - vum:124832036 529.635