Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03238 ATGCAGGATCCCAATATTGATGATAAGTGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTTAAAATGTTTTCTCCTTATGGAAAGATCATTTCTGAGGACTTCTTATGGCACACGCGTGGCCCAAAACGAGGGGAGCCACGGGGTTTTGCGTTTATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTTGCCTGTGGCCGGCCATTGGTTGTTCGTCTTGCTGGTGAGAAGTGCATGCTGGAAACAGCTGATAAGTCTACAAAAGCAGTAAGTGAAGGGCTCAAGGTGCATGTGATTGGAGGTGGTGGTGGTGCCATGGGACAGACAAGTCGTAGTGCGAAAATAGCTGCTATAAAAAATAAATTGAAATCATTAGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAGTGGCAATATTTCTTGA 480 0.4375 MQDPNIDDKCESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCMLETADKSTKAVSEGLKVHVIGGGGGAMGQTSRSAKIAAIKNKLKSLEEESSRTKKQKQSGNIS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03238 159 SMART rrm1_1 13 89 IPR000504 GO:0003723
Spst4g03238 159 SUPERFAMILY RNA-binding domain, RBD 5 96 IPR035979 GO:0003676
Spst4g03238 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 93 IPR000504 GO:0003723
Spst4g03238 159 Coils Coil 132 152 - -
Spst4g03238 159 CDD RRM_RBM18 13 91 IPR039157 -
Spst4g03238 159 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 95 - -
Spst4g03238 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 86 IPR000504 GO:0003723
Spst4g03238 159 Gene3D - 9 104 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03238 Spst-Chr4 72106117 72106774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03238 12 94 Eukaryotic Initiation Factors Gene Family AT3G16380 36.145 3.62e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03238 K24527 - gmx:100806572 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03238 4 72106117 72106774 Spst4g03238 4 72106117 72106774 ECH