Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03236 ATGTCTTCTCCGGGGTTCACTGGCGGAGCTGGGGCGTCGGGGTATTTCGCCGGGGCGGGTGGTTTCAGCGGGAGATCCATTCCGGCGGCCACCATGAACAACCCCAACGCCGCTGCGTCTGCCACCACCAACCTCCACCCTCTCTACCGTGCCCAACAACAGAACCTCCCCGCAATGTTTCTAGATCCTTCCTCGCAGATCGCTCAACGCCAAACACCAACCCTCATCGGTAAACGCACCCTCACAGAATTCCAAACCTATAACCAGACATATAACCAAACCAACAACAACCCTAACCACGTCCTCTCTAACCTTTTGCTTCGTTCCGTGAAGCCCCGAACCAATTTTCCTCAGAGTTCCATGGATAATTTTCCCGAATTGCAGAACCAAAACCCTTCCGTTTACCAACCGCAGCGTTTTGGTGTTCCTTTACTTCACCAGCTCCGTCCCCAGCCCATTAACCTTCCCAGCAACGGGCCTGGACCCATGACGGGCCCTAATTTCGGGTACCGGAACTCCAATTTGGGCTTGCCACAGAACCGGGTTCGGCTATCTGTTCCCCTCCCGGTTCCGGTTCAGGTGGCTGAACCAGAGAAGAAGAACATCGATCACCGGCTTCTGGAATTGGAGAAGCAGCTTCTTGAAGACAACGACGAAGAAGGAGAAGCCGATGCTGCATCTGTGATAACCACCAGCGAGTGGTCAGAGACTTATCAGAATTTAATCAGTCCCGGTCCGGTTCAGAAACCGGTTTCCACGTCGCCGACTTCGTCGACCGCGTCTTCTACATCGTCTTCTTCCTCCGTCGCATCACCTGCTTCTGGATGCTCGAAGCAAACGCTCATGGAAGCCGCATCTGCAATTGTCGAAGGAAAACATGACGTCGCGACGGAGATCCTGAACCGGTTGAACGGCCCCAACCGAACTGATAGGTTAACCGACTGCATGGTTTCGGCGTTGAAGTCGAGGTTGAATCCGGTGGAATATCCACCTCCTGTGGCGGAGCTTTTCAGCCAGGAACATGCAGAATCGACTCAGTTGCTTTTGGAAAACTCCGTGTGTTTCAAGGTAGGGTTCATGGCTGCCAATCTTGCAATTTTGGAAGCAGCATTTGAAGAGAAGACGGAGAACAGGTTCTGCGTGGTGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCATCTCCTCAACGCGCTTTCAGCGCGTGGTCAGAACGCGACGCTGAAGATCGTGGCGGTGTTCGAAACCGGCGGAGAGGACAAAGTGCGTGCAGTGGGAGACATGCTGAGTCGAATCGCGGAGAGGATGAGGATAGGGTTCGAGTTCAAACTGGTGGCAACTAAGAAACTCACCGAGTTGACTCGCGAGTCCCTGGGATGCGACGCGGACGAGGTTCTCGCGGTGAACTTTCCGTTCAAGCTGAGCAAGATTCCCGACGAGAGCGTTTCCACTGAGAACCCTCGCGATGATCTTCTCCGGCGCGTGAAGGGACTGGCGCCGCGCGTGGTGACCATCGTGGAGCAGGAGATGAACGCAAACACAGCGCCGTTTCTGGCTCGCGTAGCCGAAACACTGTCATATTACAGCACGATGTTGGAATCAATTGAGGCTACCACAAATAGGGATAACAATAACAGCAACAACACTGACCGATTCAGACTGGAAGAAGGACTGAGTAGGAAGTTACACAACTCAGTATCTTGTGAAGGCAGAGATCGTGTGGAGCGATGTGAAGTGTTTGGAAAATGGCGGGCGCGTATGACCATGGCAGGGTTCGAGCTAAAGCCACTGAGTCAAAACATGGCCGAGTCAATAAAATCGCGACTCACCTCTGTCAACAACCGAGTCAACTCAGGACTGATCGTGAAAGAAGAAAACGGTGGGATTTGCGCTGGTTGGATGGGAAGAACACTCACGGTCGCATCTGCTTGGCGTTAA 1938 0.533 MSSPGFTGGAGASGYFAGAGGFSGRSIPAATMNNPNAAASATTNLHPLYRAQQQNLPAMFLDPSSQIAQRQTPTLIGKRTLTEFQTYNQTYNQTNNNPNHVLSNLLLRSVKPRTNFPQSSMDNFPELQNQNPSVYQPQRFGVPLLHQLRPQPINLPSNGPGPMTGPNFGYRNSNLGLPQNRVRLSVPLPVPVQVAEPEKKNIDHRLLELEKQLLEDNDEEGEADAASVITTSEWSETYQNLISPGPVQKPVSTSPTSSTASSTSSSSSVASPASGCSKQTLMEAASAIVEGKHDVATEILNRLNGPNRTDRLTDCMVSALKSRLNPVEYPPPVAELFSQEHAESTQLLLENSVCFKVGFMAANLAILEAAFEEKTENRFCVVDFEIGQGKQYPHLLNALSARGQNATLKIVAVFETGGEDKVRAVGDMLSRIAERMRIGFEFKLVATKKLTELTRESLGCDADEVLAVNFPFKLSKIPDESVSTENPRDDLLRRVKGLAPRVVTIVEQEMNANTAPFLARVAETLSYYSTMLESIEATTNRDNNNSNNTDRFRLEEGLSRKLHNSVSCEGRDRVERCEVFGKWRARMTMAGFELKPLSQNMAESIKSRLTSVNNRVNSGLIVKEENGGICAGWMGRTLTVASAWR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03236 645 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 253 633 IPR005202 -
Spst4g03236 645 Pfam GRAS domain family 278 645 IPR005202 -
Spst4g03236 645 ProSiteProfiles GRAS family profile. 256 645 IPR005202 -
Spst4g03236 645 Coils Coil 199 219 - -
Spst4g03236 645 MobiDBLite consensus disorder prediction 241 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03236 Spst-Chr4 72076211 72078148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03236 49 645 GRAS Transcription Factor Family AT5G52510 47.143 1.24e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst4g03236 GRAS 3e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03236 - - vun:114181888 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03236 4 72076211 72078148 Spst4g03236 4 72076211 72078148 ECH
Spst4g03236 4 72076211 72078148 Spst10g00935 10 10093915 10095990 PCT