Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03231 ATGGCTTTGAGTTGTGAGTCCTACGAGTGGAAGTATTATGTGTTCTTGAGCTTTAGAAGGGAAGATACCCGCATGAGTTTCACAAGCCATCTCTATGATGCTTTATGTCAAAAAGGAGTTAACACTTTCATAGACTACAAGGAACTCAAGAGGGGAGAAAAAATTTCACCTTCACTTTTTGGTGCTATTGAAGCCTCTAGGATCTCAATTGTCATATTATCCAAGACTTATGCATCTTCCACCTCTTGCTTAGATGAACTCCTTAAAATCCTTGAGTGCAAGGATTCCAAAGGTCATCTTGTTTTTCCTGTTTTTTATCACATTAATCCATCTCAGGTAAGAGAACAGAAGGGAACCTTTAAAGAAGCTTTGACCAACCATGAACGCAACTTCAAGAATGATGTGGACAAGGTGAAAAGGTGGAGGGAAGCTCTAAGTGAAGTAGCTACTTTGTCTGGGTGGCACATAAATGGGTTGGAATCTAAGTTTGTCAAAAGAATTGTTGAAGAGATATTGAGTAAGTTGAATCGCACATATCTAAGTGTTGCTAAACATCCTGTTGGTCTGGATCCCCCGGTGAATGATATTAAATCACTTTTGGAAACTGGATTAGATGATGTGCGGTCTATTGGAATCTATGGAATTGGGGGAATAGGGAAAACTACAGTTGCTAAGGCTGTTTATAACCACATTGCTAATCAGTATGAGGGTAGTGCTTTCATTGCAAATGTTAGAGATGTTTCGAGTCAAAGATTTGGCATAGTTCGGCTACAAGAAGCACTTCTTTCAGGGGTTTTGAACCATGGATATTTTAAAGACAAAGAGTATGTGAGAATGATACTAGATGGTAGTGAACTGTACTCAGATATTGGAATTGGAATTTTAATGGATAAATCTCTTATTACTGTAGAACTGAACAAGCTTTGTATGCATGAGTTGCTACAGGAAATGGCTAAGGAAATTGTTCGCTGTGAATCTCCCAAAGAGCCCGGAAAACGTAGCAGACTCTGGTTTCATGAGGATGTTCTTCATGTATTGAACCAAAATATGGGAACTAATAACATTGAAGGAATAAAGCTAGATCTACCTGAACCAAATGATCAGGTCGGCATAAGTGGAAAAGCATTGGCAAAAATGAAAAGACTTAGATTTCTGATGATCAATAATGCACAATTTTCAGATGACATTCAATATTTATCTAATGAGCTAAGACTAATTGATTGGCCGGGGTATCCTTCTTCAACTCTACCACCAACCTTTCAACCAAAGAGGCTTGTTTCTTTAAATCTGAGTCATGGTCGCATCAAAAACTTGTGGAAGGGAGTTAAGATATTCAGAGACTTGAAACTTGTCACCTTTAGCGGCTGTGAGTACCTCACTGAAATTCCTGACTTTTCAATGATTCCAAACCTTGAGAGTCTCAGCTTAGATCATTGTAAACGTTTAACTAAGGTGCATGAGTCAGTGGGATCTCTTGATAAACTTGTTGCTTTAGACTTCCTATTATGCTCCAACCTCAAGAACCTTCCAAGTTGTTTCAAGTTAAAATCTCTACGTACTTTTATCCTTACTGCCTGCTCAAAAGTTAGAAAGTTCCCTGAGATTGTCGAAAGAATGGTGCATCTTGACGAACTGCTTCTCCAAGGGACTGCCATAAAAGAACTACCACAGTCAATTGAATATCTAAATGGGCTGAAAGCGTTACTCTTGAATTCTTGCCAAAAGCTTGAGCATCTCCCTAGTAGCCTTCATAATTTGCAACAACTTACAGCACTTGGTCTCAGTGACTGCTGGAGCAGCATCCCAGATTGGTTTCATCACCAGAGTACTAATGGTTCAATTTCTCTTGAGGTGTCTTCAAGGTTGTATGGTACAGAAGTGGAGCTGCTTTTCGGTGCAGTTTTTGAGTTGGACAAAGGTGCTATTACAACTGGTATGTTTTCATGTGTATACGAGGTTACAATCAATGATCAAAAGACCCTTGTTATAGCAACAAGTTTTGACTCATTGGATACAAGTCATGTGTGGCTGACTAAGATCAATACTGGTCGTTTGATATGGCCCCTCAAGAGTATCCATCGTCAAAATTACTTTAGGATTTCGTTTGGGATATCTGATGTCTCGTCAAAGGTGAAAGTAAAAGCATCCCTTAAGAGTTGTGGTTTTCATATATCATCCAAGAAAGAAATGTATCTTATTGATCATGAGACAGTTAGGAAGTACACAGGGAATGAACAGTAG 2241 0.3891 MALSCESYEWKYYVFLSFRREDTRMSFTSHLYDALCQKGVNTFIDYKELKRGEKISPSLFGAIEASRISIVILSKTYASSTSCLDELLKILECKDSKGHLVFPVFYHINPSQVREQKGTFKEALTNHERNFKNDVDKVKRWREALSEVATLSGWHINGLESKFVKRIVEEILSKLNRTYLSVAKHPVGLDPPVNDIKSLLETGLDDVRSIGIYGIGGIGKTTVAKAVYNHIANQYEGSAFIANVRDVSSQRFGIVRLQEALLSGVLNHGYFKDKEYVRMILDGSELYSDIGIGILMDKSLITVELNKLCMHELLQEMAKEIVRCESPKEPGKRSRLWFHEDVLHVLNQNMGTNNIEGIKLDLPEPNDQVGISGKALAKMKRLRFLMINNAQFSDDIQYLSNELRLIDWPGYPSSTLPPTFQPKRLVSLNLSHGRIKNLWKGVKIFRDLKLVTFSGCEYLTEIPDFSMIPNLESLSLDHCKRLTKVHESVGSLDKLVALDFLLCSNLKNLPSCFKLKSLRTFILTACSKVRKFPEIVERMVHLDELLLQGTAIKELPQSIEYLNGLKALLLNSCQKLEHLPSSLHNLQQLTALGLSDCWSSIPDWFHHQSTNGSISLEVSSRLYGTEVELLFGAVFELDKGAITTGMFSCVYEVTINDQKTLVIATSFDSLDTSHVWLTKINTGRLIWPLKSIHRQNYFRISFGISDVSSKVKVKASLKSCGFHISSKKEMYLIDHETVRKYTGNEQ 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03231 746 SUPERFAMILY L domain-like 364 603 - -
Spst4g03231 746 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Spst4g03231 746 PRINTS Disease resistance protein signature 209 224 - -
Spst4g03231 746 PRINTS Disease resistance protein signature 466 482 - -
Spst4g03231 746 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Spst4g03231 746 Gene3D - 5 176 IPR035897 -
Spst4g03231 746 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 280 IPR044974 GO:0006952
Spst4g03231 746 SMART till_3 11 151 IPR000157 GO:0007165
Spst4g03231 746 Pfam NB-ARC domain 197 263 IPR002182 GO:0043531
Spst4g03231 746 Gene3D Ribonuclease Inhibitor 514 626 IPR032675 -
Spst4g03231 746 Gene3D Ribonuclease Inhibitor 344 513 IPR032675 -
Spst4g03231 746 ProSiteProfiles TIR domain profile. 10 171 IPR000157 GO:0007165
Spst4g03231 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 272 IPR027417 -
Spst4g03231 746 Gene3D - 177 327 IPR027417 -
Spst4g03231 746 Pfam TIR domain 11 181 IPR000157 GO:0007165
Spst4g03231 746 SUPERFAMILY "Winged helix" DNA-binding domain 274 346 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03231 Spst-Chr4 72019960 72030891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03231 273 603 WRKY Transcription Factor Family AT4G12020 38.286 1.14e-52 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03231 - - ccaj:109793662 544.273