Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03220 ATGGCACTAGCTCCTACTTCAAAAGTTGTTCTTGGTTCAATAGCCTTTGCGATCTTCTGGGTGCTAGCAGTTTTCCCTGCTGTGCCATTCTTACCCATTGGAAGAACTGCAGGGTCCCTGTTAGGTGCAATGCTTATGGTTATATTCAAAGTTCTTAGTCCAGATCAAGCTTATGGTGCAATTGATCTCCCAATTCTTGGTCTTCTTTTTGGGACAATGGTTGTTACTATTTTTCTTGAAAGAGCAAACATGTTTAAGTACTTGGGGAAATTGCTCTCTTGGAAAAGTAGAGGACCAAAGGACTTACTTTGTAGAATCTGTTTGATTTCAGCTATCTCAAGTGCTTTCTTCACAAATGATACGTCTTGCATTGTGTTGACTGAATTTGTGTTGAAAATTGCAAGGCAGCATAACCTCCCACCCTACCCTTTACTTCTTGCACTTGCTTCAAGTGCTAATATTGGATCCTCAGCAACCCCTATTGGGAACCCCCAAAATCTGGTTATAGCCATTCAGGGTAAAATATCATTTGGGAGGTTTCTGATGGGTATTCTTCCTGCTATGCTTGTAGGAGTTGTTGTGAATATTGTTTTTCTTATAGTGATGTATTGGAAGGTACTATCTAGTCCTAAGGATGAAGAGGATCCAATTTCAGAAGTTCTAGTAGAAGAGGAGGTTATTTCCCATCAGTTTTCTCCAGCTAGAATGTCTCATTTTACAACCTTGAATTCTCAAGAATGCAATGGTAATCTAGAAGTTGGTAATATTGTTCAAAACTCTTCTCAAGTTCATGTTGTGAAAGACCAATCAATTTCGAGTGTAAGTGAAGTTCAGATGATTCATAGTGGCATAAAGGATTGCACACCAAACTCAAATGCATCCAAGGAGGGGATAAATGATACAAAGGAGGAAACCATTCCTTCAAAAAATGTTGCAGTAGTAGTAGATAAATCTATTGGAGCACATGCTATGCACTCTTCAGAAGAAAAGGACTATATGAACATAAAATGGAAAAGGGTACTGTGGAAATCTTGTGTTTATGCAATCACATTGGTAATGTTGATTGCAATGCTTATTGGTTTGAATATGGCATGGACTGCAATAGCAGCCGCAATAACATTGGTGGTTCTTGATTTCAAAGATGCAGGGCCAAGCTTAGACAAGGTCTCATATTCACTTCTGATATTCTTCTGTGGAATGTTTATCACAGTAGAGGGCTTTAAGAAAACTGAAATTCCAGGTTTCATGTGGGATGCAATGGAGCCCTATTCTCGCATAGATCATGCTAGTGGAACAGCTATACTTGCTATAGTCATACTTATCCTATCAAATTTGGCATCAAATGTACCAACTGTTCTGTTGCTTGGAGCAAGAGTTGCAGCCTCAGCTGCTGCAATTTCCAAAGGAGATGAGGAGAAATCATGGCTAATCTTAGCTTGGGTTAGCACCATAGCAGGGAACTTTTCATTGTTAGGATCTGCTGCCAACTTGATAGTGTGCGAACAAGCTCGTCGTGCACCAAACCTTGGATACACATTAACCTTTTGGACTCATCTCAAATTTGGACTTCCTTCTACTCTTATAGTCACTGCTATAGGGTTGACACTCATAAAATGA 1617 0.3958 MALAPTSKVVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVIFKVLSPDQAYGAIDLPILGLLFGTMVVTIFLERANMFKYLGKLLSWKSRGPKDLLCRICLISAISSAFFTNDTSCIVLTEFVLKIARQHNLPPYPLLLALASSANIGSSATPIGNPQNLVIAIQGKISFGRFLMGILPAMLVGVVVNIVFLIVMYWKVLSSPKDEEDPISEVLVEEEVISHQFSPARMSHFTTLNSQECNGNLEVGNIVQNSSQVHVVKDQSISSVSEVQMIHSGIKDCTPNSNASKEGINDTKEETIPSKNVAVVVDKSIGAHAMHSSEEKDYMNIKWKRVLWKSCVYAITLVMLIAMLIGLNMAWTAIAAAITLVVLDFKDAGPSLDKVSYSLLIFFCGMFITVEGFKKTEIPGFMWDAMEPYSRIDHASGTAILAIVILILSNLASNVPTVLLLGARVAASAAAISKGDEEKSWLILAWVSTIAGNFSLLGSAANLIVCEQARRAPNLGYTLTFWTHLKFGLPSTLIVTAIGLTLIK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03220 538 Pfam Citrate transporter 27 485 IPR004680 GO:0016020|GO:0055085
Spst4g03220 538 CDD YbiR_permease 28 537 - -
Spst4g03220 538 PANTHER TRANSPORTER ARSB-RELATED 1 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03220 Spst-Chr4 71894477 71896418 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03220 - - gmx:100791733 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03220 4 71894477 71896418 Spst10g00942 10 10170457 10174653 ECH
Spst4g03220 4 71894477 71896418 Spst4g03220 4 71894477 71896418 ECH
Spst10g00942 10 10170457 10174653 Spst4g03220 4 71894477 71896418 PCT