Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03201 ATGTCAGGATCCAAGGAAGAAAATCCTGACCTTCTTCCCAAGTCAAAGCCACAGGAGGAACATGGGTTTGCCATGGATTTTGATGTTGGTTTGGAAAGTCTGTGGCCCTTGGATCATATATCTTTGCTCTCTAACCCCGTGTCTCCTTTTCTCTTATCCACTATCTCTGAACAACCTTTTTCTCCCGTCTGGGCTTTTTCTGATGTTGAAGATGAGAGGCAAATCAGAATTGCAGCTGCAGGACTTGCTTCATTTCAAGTTGACTATAACTTGATAAACGCCCCTGAACTTTCTTCAATTTATTGTAATACAATTGAAAATCCGGTTGAAGATGATAACAACAAGAAAACTGTGTCACCACCCCTTGTAGCTGTGCCACCTTCAGAAAATCCAGATGGTTATTGTTTGATCAAGGAAAGAATGACACAAGCACTTCGGCACTTCAAAAAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGTGTCTCTGATGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCTGGTAGAGTTTTTCAGCATAAAATTCCTGAATGGACTCCCAATGTTCAGTACTATTCCAGCAAAGAGTATCAGCGCCTGAATCATGCACAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAACCTGCAGGACAGTCATGTGTAGCTGTACTGGAGTTGATAATGACTTCACCCAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTAAGGAGTTCAGAAATTATGGAGCATCCATACAATCAGATTTGTAATGAAGATCGCCAGTACGCATTAGCTGAAATTTTGGAGATACTGACAGTTGTGTGTGAGACTCATAGTTTGCCTTTGGCACAAACTTGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCTTAAGAAAAGTTGCTCAAGTTTTGACGGTTCTTGCATGGGGCAAGTATGCATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCATGAGGCTTGTTTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCTCACAACATGTGTTTCTGTGGGAACATTTCTCAATTCTGCAAAACTGAATATCCCTTAGTACATTATGCTCTCATGTTTGCTTTAACCAGCTGTTTTGCAGTATGCTTACAAAGCTCTCACACAGGAAATGATGAATATGTGCTAGAGTTTTTTCTGCCTCCAAGGATCACAGACTTCAATGAACAAAAAAGCTTGTTGGGGTCCATATTGGCCACGATGAAGCCACGTTTTCAGAGTCTTAAGATTGCAGCTGGTGCTGAATTTGAGGAAAATTGTTCAGTTGAAATTATAGAAGCAAGAAAAGAAAGAGTTGATTTGAGGTTTGAATCAATTCCAATTACTCATTCTTCTAACTCACCACCTAGACATGCCTCTCCAAATATGGGAGAGAAGCTGCAACTGGAGCCACCAGAGCAGGAAATAATGGCAAACTTTGATGCCATAAATGATGGAAGGAGTCTTGGTGATAATACAGGTGGGCACATTGATCAGAACACTTCCTTGGAAGCCAAAACCAAAAAGAAACCCTCAGAAAGAAAACGTGGAAAAGCTGAGAAAACAATTAGTCTTGATGTTCTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAACGCATCTGTAGGCAGCATGGGATATCGCGTTGGCCATCTCGAAAGATAAAAAAGGTTAATCGTTCCCTATCCAAGCTCAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTATGTACTGGTTCAATTCCCAATGCGGGGGCTGGTTCAAACAAGTTCAACAACCAAACCTCGTTGACCATTAGGCCATTAGAACCTAAGATCAATGAAAATGATTTTGATGCATCTAAAGCATCAGAATCAAACAAACAGGCTGGGGTGGAAGATCACTACCTAGGTACAAGGGCACAAAATTTTGAGAAAATGATTAATGAAAAAGTTGTGGCCATTCAGGAGATTGGCACTAAAGGGACTACCAAGTTTAGCGCTAGGAGTGGCTTAAGTGAAGGAAGTGCAAATCCTTCTCCTCATGGTTCATGCCAAGGTAGTCCTCCAAATGAAATATCACCTCCAAAATATATATTTGTAACAGGCAACAGTGAGCAATGTCTTGTGTTAAGGGGATCACTGGGGTCAACACTGCACTCAACTAGTACACCGAACCGTGCAACTGCATACGCTATGCCTAACTTTTTGGAAACAGAACCTCAAGAACCATTTGAAGGACAACTACTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGGAATCTCTGTCCTTCAGCACATGCTGTTTTGGAAGATCAGGTTCCTGAACCTTGCAGGATGAATCCTCAATGTGCTGCTGATTTGGCTTCTGTGCCACACATGGATACTCTCAATAATAATAACATGACACCTTTTGCAGTTAGCAATGAGGTGAAGAGTGTCACCATTAAGGCAACTTGTAAAGAAGATATCATAAGGTTTAAGGTCTCTTTGAACTGTGGTATTGTGGAACTGAAAGAAGAAATTGCCAAAAGATTGAAACTAGAGGAGGGAACATTTGATATCAAGTATATGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGTAGACCTGCAGGAGTGTATGGACATCTCAAGATCATCAGGCAGCAACATAATCAGGATTGTGGTGCATGATATTCTGCCCATTCTTGATAGCTCTTGTGAGAGCTCAGGACATTGGAAAGGTTGTATATAG 3003 0.4163 MSGSKEENPDLLPKSKPQEEHGFAMDFDVGLESLWPLDHISLLSNPVSPFLLSTISEQPFSPVWAFSDVEDERQIRIAAAGLASFQVDYNLINAPELSSIYCNTIENPVEDDNNKKTVSPPLVAVPPSENPDGYCLIKERMTQALRHFKKLTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQHKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSPKINYAPEVDKICKALEAVNLRSSEIMEHPYNQICNEDRQYALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGLKKSCSSFDGSCMGQVCMSITEVAFYVIDAHTWGFHEACFEHHLQQGQGVAGRAFLSHNMCFCGNISQFCKTEYPLVHYALMFALTSCFAVCLQSSHTGNDEYVLEFFLPPRITDFNEQKSLLGSILATMKPRFQSLKIAAGAEFEENCSVEIIEARKERVDLRFESIPITHSSNSPPRHASPNMGEKLQLEPPEQEIMANFDAINDGRSLGDNTGGHIDQNTSLEAKTKKKPSERKRGKAEKTISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLCTGSIPNAGAGSNKFNNQTSLTIRPLEPKINENDFDASKASESNKQAGVEDHYLGTRAQNFEKMINEKVVAIQEIGTKGTTKFSARSGLSEGSANPSPHGSCQGSPPNEISPPKYIFVTGNSEQCLVLRGSLGSTLHSTSTPNRATAYAMPNFLETEPQEPFEGQLLEGVGSSKDLRNLCPSAHAVLEDQVPEPCRMNPQCAADLASVPHMDTLNNNNMTPFAVSNEVKSVTIKATCKEDIIRFKVSLNCGIVELKEEIAKRLKLEEGTFDIKYMDDDHEWVLIACDVDLQECMDISRSSGSNIIRIVVHDILPILDSSCESSGHWKGCI 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03201 1000 Gene3D - 897 984 - -
Spst4g03201 1000 CDD PB1_NLP 901 981 IPR034891 -
Spst4g03201 1000 Pfam RWP-RK domain 596 644 IPR003035 -
Spst4g03201 1000 SUPERFAMILY CAD & PB1 domains 895 985 - -
Spst4g03201 1000 PANTHER PROTEIN NLP8 57 994 IPR045012 GO:0003700
Spst4g03201 1000 MobiDBLite consensus disorder prediction 562 593 - -
Spst4g03201 1000 Pfam PB1 domain 901 981 IPR000270 GO:0005515
Spst4g03201 1000 ProSiteProfiles RWP-RK domain profile. 581 664 IPR003035 -
Spst4g03201 1000 ProSiteProfiles PB1 domain profile. 900 982 IPR000270 GO:0005515
Spst4g03201 1000 SMART PB1_new 900 982 IPR000270 GO:0005515
Spst4g03201 1000 MobiDBLite consensus disorder prediction 751 778 - -
Spst4g03201 1000 MobiDBLite consensus disorder prediction 576 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03201 Spst-Chr4 71685707 71691665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03201 271 994 NLP Transcription Factor Family AT4G24020 51.223 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst4g03201 PB1 2.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03201 - - gmx:100780901 1635.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03201 4 71685707 71691665 Spst10g00954 10 10264652 10268904 PCT