Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g03198 ATGCAGATCTTGGTGATACCTGCAGCACTTGCTTTCTTTGCCATATCTCTTCCTTTGCTCATCAAACTAACGTTTTCTTGGTGGATTTCACCCATCCAAAATCATTTTAAGCTCAAAAGATGTGGATTTGGAGGACCACCCCCAAGTTTTCCTCTTGGAAACATTCAAGAGATGAAAAAGAAGAACAGTGTTAGTTCTTCACCAGAGTCCTCTAACCTCACCCACGATATACACTCCACTGTTTTCCCCTACTTTTCTAGGTGGCAAAACTCTCACGGGAAGGTGTTTATCTATTGGCTGGGTACAGAACCATTTTTGTACATATCTGATCCAGAATTTTTGAAAAAAATGTCCACAGCGGTTTTGGCCAAGAGATGGGGAAAACCTAGAGTATTTAGACATGATCGAGACCCTTTGTTTGGAAATGGTTTGGTTATGGTTGAAGGCAACGAATGGGTTCGTCACCGACATGTTATAGCACCAGCATTTTCTCCTCTTAACTTGAAGGCAATGGCAAGCATGATGACTGAGTCTACGAATCAAATGATAGAAAGGTGGATTGCACATATCAACTTGGGAAACCCTGAAATCGATGTGGAAAGAGAGGTTGTAGAAACTGCAGGAGAAATCATTGCAAAAACAAGCTTTGGCATGAAGGGAAAAAATGCAAAGGAAGTGTCTGAAAAGCTACGTGCCCTACAAATGACACTTTTCAAGACGACAAGATATGTTGGGGTTCCATTTGGCAAGTGTTTGAACGTGAAGAAAACCCTAACGGCGAAGAAACTTGGGAAAGAGATTGACGAACTTTTGTTATCTATCATAACATCTCGTATGAAATCAATCAAAAGAGAAACTCAAGAAGACTTGTTGGGGTTGTTGTTGCAAGGAAATCATCAAGGTGATGGGAAGTTAGGGAAGACGTTCACCACCAGAGATTTGTTGGATGAGTGCAAAACTTTCTTCTTTGCAGGCCATGAGACAACAGCATTGGCTATCTCATGGACTTTGTTGCTTCTTGCTATGCATGAAGATTGGCAAATCCAGTTAAGAGATGAGATTAGAGAAGTGGTCGGTGATAAAGAACTCGACATCAACGTGCTTGCAGGTTTGAAAAAGATGAAGTGGGTGATGAATGAAGTTCTAAGACTCTACCCAACGGCACCAAATGTACAAAGGCAAGCAAGAGAGGACATTCAAGTTGATAATTTAAAGGTTCCTAATGGGACCAACATGTGGATTGATGTTGTGGCAATGCACCATGATTCAGCATTGTGGGGAAAAGATGTCAACGAGTTTAGACCAGAGAGGTTCATGAATGATGTCAATGGTGGATGTAACCACAAAATGGGGTACTTGCCTTTTGGATTTGGAGGGAGAATGTGTGTTGGAAGGAACTTGAGCTTCATGGAGTATAAGATAGTGCTAACCCTACTTCTCTCTAGATTTAGCTTTAAAGTTTCCCCAAGTTATAACCATTCACCCTCCATCATGCTCTCCCTTAGACCAACTTATGGACTTCGTCTCTTAGTTCAACCCCTTTATTAA 1548 0.4134 MQILVIPAALAFFAISLPLLIKLTFSWWISPIQNHFKLKRCGFGGPPPSFPLGNIQEMKKKNSVSSSPESSNLTHDIHSTVFPYFSRWQNSHGKVFIYWLGTEPFLYISDPEFLKKMSTAVLAKRWGKPRVFRHDRDPLFGNGLVMVEGNEWVRHRHVIAPAFSPLNLKAMASMMTESTNQMIERWIAHINLGNPEIDVEREVVETAGEIIAKTSFGMKGKNAKEVSEKLRALQMTLFKTTRYVGVPFGKCLNVKKTLTAKKLGKEIDELLLSIITSRMKSIKRETQEDLLGLLLQGNHQGDGKLGKTFTTRDLLDECKTFFFAGHETTALAISWTLLLLAMHEDWQIQLRDEIREVVGDKELDINVLAGLKKMKWVMNEVLRLYPTAPNVQRQAREDIQVDNLKVPNGTNMWIDVVAMHHDSALWGKDVNEFRPERFMNDVNGGCNHKMGYLPFGFGGRMCVGRNLSFMEYKIVLTLLLSRFSFKVSPSYNHSPSIMLSLRPTYGLRLLVQPLY 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g03198 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Spst4g03198 515 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 SUPERFAMILY Cytochrome P450 76 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 Gene3D Cytochrome P450 28 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 Pfam Cytochrome P450 81 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PANTHER CYTOCHROME P450 FAMILY MEMBER 22 506 - -
Spst4g03198 515 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g03198 515 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g03198 Spst-Chr4 71634862 71638432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g03198 11 514 Cytochrome P450 AT5G52400 59.020 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g03198 - - gmx:100810679 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03198 4 71634862 71638432 Spst4g03198 4 71634862 71638432 ECH
Spst4g03198 4 71634862 71638432 Spst10g00960 10 10332389 10335117 PCT
Spst10g00961 10 10343701 10345827 Spst4g03198 4 71634862 71638432 PCT